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  5. LOC_Os01g07070.2

LOC_Os01g07070.2 (TAF15b, LOC_Os01g07070)


Aliases : TAF15b, LOC_Os01g07070

Description : Transcription initiation factor TFIID subunit 15b OS=Arabidopsis thaliana (sp|q94kd0|ta15b_arath : 155.0)


Gene families : OG0003283 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003283_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g07070.2
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00153p00073330 TAF15b,... Transcription initiation factor TFIID subunit 15b... 0.07 OrthoFinder output from all 47 species
AT5G58470 TAF15b TBP-associated factor 15B 0.07 OrthoFinder output from all 47 species
Aob_g03332 TAF15b not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g13937 TAF15b not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g07541 TAF15b not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.19G014000.1 TAF15b, Ceric.19G014000 not classified & original description: pacid=50575256... 0.03 OrthoFinder output from all 47 species
Dcu_g12088 TAF15b not classified & original description: none 0.04 OrthoFinder output from all 47 species
Gb_25472 TAF15b no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_10427252g0010 TAF15b Transcription initiation factor TFIID subunit 15b... 0.04 OrthoFinder output from all 47 species
Mp7g03900.1 TAF15b Transcription initiation factor TFIID subunit 15b... 0.04 OrthoFinder output from all 47 species
Pir_g06028 TAF15b not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g11892 TAF15b not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g39313 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc06g082220.4.1 TAF15b, Solyc06g082220 Transcription initiation factor TFIID subunit 15b... 0.04 OrthoFinder output from all 47 species
Zm00001e016824_P001 TAF15b, Zm00001e016824 Transcription initiation factor TFIID subunit 15b... 0.06 OrthoFinder output from all 47 species
Zm00001e025837_P001 TAF15b, Zm00001e025837 Transcription initiation factor TFIID subunit 15b... 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000504 RRM_dom 364 393
IPR001876 Znf_RanBP2 88 118
No external refs found!