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  5. LOC_Os01g06000.1

LOC_Os01g06000.1 (RPS15A, LOC_Os01g06000)


Aliases : RPS15A, LOC_Os01g06000

Description : Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana (sp|q9fje6|pp437_arath : 660.0)


Gene families : OG0001724 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001724_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g06000.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
Adi_g068997 RPS15A component *(uS8) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Aspi01Gene64037.t1 RPS15A, Aspi01Gene64037 component *(uS8) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Zm00001e016871_P001 Zm00001e016871 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016570 histone modification IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 724 750
IPR002885 Pentatricopeptide_repeat 201 229
IPR002885 Pentatricopeptide_repeat 585 614
IPR002885 Pentatricopeptide_repeat 445 490
IPR002885 Pentatricopeptide_repeat 233 280
IPR002885 Pentatricopeptide_repeat 825 871
IPR002885 Pentatricopeptide_repeat 756 804
IPR002885 Pentatricopeptide_repeat 655 700
IPR002885 Pentatricopeptide_repeat 336 385
IPR002885 Pentatricopeptide_repeat 511 559
IPR002885 Pentatricopeptide_repeat 402 434
No external refs found!