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  5. LOC_Os01g05080.1

LOC_Os01g05080.1 (LOC_Os01g05080)


Aliases : LOC_Os01g05080

Description : Thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Arabidopsis thaliana (sp|o22160|tl15a_arath : 250.0)


Gene families : OG0007302 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007302_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g05080.1
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00257960 evm_27.TU.AmTr_v1... Thylakoid lumenal 15 kDa protein 1, chloroplastic... 0.03 OrthoFinder output from all 47 species
Adi_g053093 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g20783 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g00799 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g11060 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16139 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene24909.t1 Aspi01Gene24909 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G001200.1 Ceric.01G001200 not classified & original description: pacid=50590454... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020961.57 No alias Thylakoid lumenal 15 kDa protein 1, chloroplastic... 0.02 OrthoFinder output from all 47 species
Dac_g27653 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g13753 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g05414 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01016495001 No alias Thylakoid lumenal 15 kDa protein 1, chloroplastic... 0.05 OrthoFinder output from all 47 species
Len_g19840 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
MA_10232509g0010 No alias Thylakoid lumenal 15 kDa protein 1, chloroplastic... 0.05 OrthoFinder output from all 47 species
Msp_g04471 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g06581 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g59221 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0140.g022678 No alias not classified & original description: CDS=682-1350 0.03 OrthoFinder output from all 47 species
Smo76876 No alias Thylakoid lumenal 15 kDa protein 1, chloroplastic... 0.02 OrthoFinder output from all 47 species
Tin_g14674 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e025798_P001 Zm00001e025798 Thylakoid lumenal 15 kDa protein 1, chloroplastic... 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001646 5peptide_repeat 90 128
No external refs found!