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  5. LOC_Os01g04130.1

LOC_Os01g04130.1 (LOC_Os01g04130)


Aliases : LOC_Os01g04130

Description : Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Oryza sativa subsp. japonica (sp|q5zcl8|crs2_orysj : 215.0)


Gene families : OG0001693 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001693_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: LOC_Os01g04130.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00044p00230120 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.01 OrthoFinder output from all 47 species
Adi_g024845 No alias plastidial RNA splicing factor *(cPTH)) & original... 0.02 OrthoFinder output from all 47 species
Ala_g01472 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g13402 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene49461.t1 Aspi01Gene49461 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.36G064500.1 Ceric.36G064500 not classified & original description: pacid=50568078... 0.02 OrthoFinder output from all 47 species
Dde_g41554 No alias plastidial RNA splicing factor *(cPTH)) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01008257001 No alias RNA processing.organelle machineries.RNA... 0.01 OrthoFinder output from all 47 species
GSVIVT01031009001 No alias RNA processing.organelle machineries.RNA... 0.06 OrthoFinder output from all 47 species
Nbi_g14677 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g17021 No alias plastidial RNA splicing factor *(cPTH)) & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009536 plastid IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
InterPro domains Description Start Stop
IPR001328 Pept_tRNA_hydro 66 140
No external refs found!