1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os01g03100.1

LOC_Os01g03100.1 (LOC_Os01g03100)


Aliases : LOC_Os01g03100

Description : RING-v-class E3 ligase


Gene families : OG0000370 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000370_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g03100.1
Cluster HCCA: Cluster_159

Target Alias Description ECC score Gene Family Method Actions
Adi_g072549 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g19239 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000789.27 No alias No description available 0.01 OrthoFinder output from all 47 species
Cre09.g400738 No alias Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder output from all 47 species
MA_10427291g0010 No alias RING-v-class E3 ligase 0.02 OrthoFinder output from all 47 species
Nbi_g11851 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g01567 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e009834_P004 Zm00001e009834 RING-v-class E3 ligase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0015095 magnesium ion transmembrane transporter activity IEP HCCA
BP GO:0015693 magnesium ion transport IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0070569 uridylyltransferase activity IEP HCCA
InterPro domains Description Start Stop
IPR011016 Znf_RING-CH 55 100
IPR022143 DUF3675 106 221
No external refs found!