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  5. LOC_Os01g02884.1

LOC_Os01g02884.1 (LOC_Os01g02884)


Aliases : LOC_Os01g02884

Description : DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana (sp|f4hyj7|dexh3_arath : 1174.0)


Gene families : OG0000629 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000629_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g02884.1
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00115360 evm_27.TU.AmTr_v1... DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AMTR_s00028p00237040 evm_27.TU.AmTr_v1... DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AT1G58060 No alias RNA helicase family protein 0.03 OrthoFinder output from all 47 species
AT2G01130 No alias DEA(D/H)-box RNA helicase family protein 0.05 OrthoFinder output from all 47 species
AT5G04895 No alias DEA(D/H)-box RNA helicase family protein 0.02 OrthoFinder output from all 47 species
Aev_g01587 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g04475 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g32440 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene58524.t1 Aspi01Gene58524 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene63077.t1 Aspi01Gene63077 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0449.g070725 No alias not classified & original description: CDS=208-3285 0.02 OrthoFinder output from all 47 species
Cba_g21782 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g33749 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.1Z227800.1 Ceric.1Z227800 not classified & original description: pacid=50639140... 0.02 OrthoFinder output from all 47 species
Ceric.1Z321000.1 Ceric.1Z321000 not classified & original description: pacid=50597147... 0.03 OrthoFinder output from all 47 species
Ceric.20G077000.1 Ceric.20G077000 not classified & original description: pacid=50565979... 0.03 OrthoFinder output from all 47 species
Ceric.23G070100.1 Ceric.23G070100 not classified & original description: pacid=50609964... 0.04 OrthoFinder output from all 47 species
Cre03.g171650 No alias DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Dac_g08746 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g19268 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g03968 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g07134 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01011809001 No alias DExH-box ATP-dependent RNA helicase DExH5, mitochondrial... 0.05 OrthoFinder output from all 47 species
Gb_05411 No alias DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.04 OrthoFinder output from all 47 species
Gb_33245 No alias DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Len_g41812 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g47532 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_97917g0010 No alias DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Mp8g13160.1 No alias DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Ore_g44903 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g10916 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g18315 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c17_19726V3.1 Pp3c17_19726 RNA helicase family protein 0.01 OrthoFinder output from all 47 species
Ppi_g09359 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g07185 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo177444 No alias DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.03 OrthoFinder output from all 47 species
Solyc01g006710.4.1 Solyc01g006710 DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc01g006970.4.1 Solyc01g006970 DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Solyc01g103690.4.1 Solyc01g103690 DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.03 OrthoFinder output from all 47 species
Spa_g26916 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g47124 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g47720 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g02164 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g02904 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e004608_P001 Zm00001e004608 DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0016459 myosin complex IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 372 453
IPR011709 DEAD-box_helicase_OB_fold 528 610
IPR014720 dsRBD_dom 716 778
IPR001650 Helicase_C 179 308
No external refs found!