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  5. LOC_Os01g02170.1

LOC_Os01g02170.1 (LOC_Os01g02170)


Aliases : LOC_Os01g02170

Description : no hits & (original description: none)


Gene families : OG0006115 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006115_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g02170.1
Cluster HCCA: Cluster_150

Target Alias Description ECC score Gene Family Method Actions
AT1G18850 No alias unknown protein; FUNCTIONS IN: molecular_function... 0.04 OrthoFinder output from all 47 species
Cba_g69840 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g01225 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Mp2g01310.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Spa_g06568 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e017099_P003 Zm00001e017099 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!