1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os01g01060.1

LOC_Os01g01060.1 (RPS5B, ATRPS5B, LOC_Os01g01060)


Aliases : RPS5B, ATRPS5B, LOC_Os01g01060

Description : component RPS5 of SSU proteome


Gene families : OG0002478 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002478_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g01060.1
Cluster HCCA: Cluster_130

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00068p00119380 RPS5B, ATRPS5B,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.16 OrthoFinder output from all 47 species
AMTR_s00090p00050460 RPS5B, ATRPS5B,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.19 OrthoFinder output from all 47 species
AT2G37270 RPS5B, ATRPS5B ribosomal protein 5B 0.27 OrthoFinder output from all 47 species
AT3G11940 AML1, RPS5A, ATRPS5A ribosomal protein 5A 0.28 OrthoFinder output from all 47 species
Adi_g078109 RPS5B, ATRPS5B component *(uS7) of small ribosomal-subunit (SSU)... 0.12 OrthoFinder output from all 47 species
Adi_g078110 RPS5B, ATRPS5B component *(uS7) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
Aev_g08152 RPS5B, ATRPS5B component *(uS7) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Aev_g24264 RPS5B, ATRPS5B component *(uS7) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ala_g00869 RPS5B, ATRPS5B component *(uS7) of small ribosomal-subunit (SSU)... 0.1 OrthoFinder output from all 47 species
Als_g37844 RPS5B, ATRPS5B component *(uS7) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Aop_g01983 RPS5B, ATRPS5B component *(uS7) of small ribosomal-subunit (SSU)... 0.14 OrthoFinder output from all 47 species
Azfi_s0032.g024587 RPS5B, ATRPS5B component *(uS7) of small ribosomal-subunit (SSU)... 0.1 OrthoFinder output from all 47 species
Azfi_s0374.g067208 RPS5B, ATRPS5B component *(uS7) of small ribosomal-subunit (SSU)... 0.15 OrthoFinder output from all 47 species
Cba_g20695 RPS5B, ATRPS5B component *(uS7) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Ceric.09G021200.1 AML1, RPS5A,... component *(uS7) of small ribosomal-subunit (SSU)... 0.22 OrthoFinder output from all 47 species
Ceric.09G021300.1 RPS5B, ATRPS5B,... component *(uS7) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Ceric.09G021500.1 AML1, RPS5A,... component *(uS7) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ceric.09G021600.1 AML1, RPS5A,... component *(uS7) of small ribosomal-subunit (SSU)... 0.1 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021332.10 RPS5B, ATRPS5B Protein biosynthesis.cytosolic ribosome.small subunit... 0.2 OrthoFinder output from all 47 species
Cre06.g290950 RPS5B, ATRPS5B Protein biosynthesis.cytosolic ribosome.small subunit... 0.25 OrthoFinder output from all 47 species
Dac_g10905 RPS5B, ATRPS5B component *(uS7) of small ribosomal-subunit (SSU)... 0.24 OrthoFinder output from all 47 species
Dcu_g12789 RPS5B, ATRPS5B component *(uS7) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Dde_g00502 RPS5B, ATRPS5B component *(uS7) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ehy_g00502 RPS5B, ATRPS5B component *(uS7) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
GSVIVT01026328001 RPS5B, ATRPS5B Protein biosynthesis.cytosolic ribosome.small subunit... 0.21 OrthoFinder output from all 47 species
GSVIVT01033419001 RPS5B, ATRPS5B Protein biosynthesis.cytosolic ribosome.small subunit... 0.23 OrthoFinder output from all 47 species
Gb_04954 RPS5B, ATRPS5B component RPS5 of SSU proteome 0.11 OrthoFinder output from all 47 species
Gb_10561 AML1, RPS5A, ATRPS5A component RPS5 of SSU proteome 0.11 OrthoFinder output from all 47 species
Len_g06369 RPS5B, ATRPS5B component *(uS7) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Len_g09112 RPS5B, ATRPS5B component *(uS7) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Len_g46814 RPS5B, ATRPS5B component *(uS7) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Lfl_g27142 RPS5B, ATRPS5B component *(uS7) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
MA_10428487g0010 RPS5B, ATRPS5B component RPS5 of SSU proteome 0.15 OrthoFinder output from all 47 species
Mp3g10570.1 RPS5B, ATRPS5B component RPS5 of SSU proteome 0.22 OrthoFinder output from all 47 species
Msp_g06764 RPS5B, ATRPS5B component *(uS7) of small ribosomal-subunit (SSU)... 0.1 OrthoFinder output from all 47 species
Nbi_g09424 RPS5B, ATRPS5B component *(uS7) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Ore_g19556 RPS5B, ATRPS5B component *(uS7) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Pir_g10573 RPS5B, ATRPS5B component *(uS7) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Pp3c20_18970V3.1 RPS5B, ATRPS5B,... ribosomal protein 5B 0.1 OrthoFinder output from all 47 species
Pp3c23_6150V3.1 RPS5B, ATRPS5B,... ribosomal protein 5B 0.14 OrthoFinder output from all 47 species
Pp3c8_16820V3.1 RPS5B, ATRPS5B,... ribosomal protein 5B 0.16 OrthoFinder output from all 47 species
Pp3c8_16860V3.1 RPS5B, ATRPS5B,... ribosomal protein 5B 0.13 OrthoFinder output from all 47 species
Ppi_g23590 AML1, RPS5A, ATRPS5A component *(uS7) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Ppi_g62524 RPS5B, ATRPS5B component *(uS7) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0035.g011476 RPS5B, ATRPS5B component *(uS7) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sam_g15969 No alias component *(uS7) of small ribosomal-subunit (SSU)... 0.2 OrthoFinder output from all 47 species
Sam_g25932 No alias component *(uS7) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Smo164593 AML1, RPS5A, ATRPS5A Protein biosynthesis.cytosolic ribosome.small subunit... 0.15 OrthoFinder output from all 47 species
Smo271466 RPS5B, ATRPS5B Protein biosynthesis.cytosolic ribosome.small subunit... 0.13 OrthoFinder output from all 47 species
Solyc10g078620.1.1 AML1, RPS5A,... component RPS5 of SSU proteome 0.19 OrthoFinder output from all 47 species
Solyc11g042610.2.1 RPS5B, ATRPS5B,... component RPS5 of SSU proteome 0.22 OrthoFinder output from all 47 species
Spa_g17272 RPS5B, ATRPS5B component *(uS7) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
Spa_g37870 RPS5B, ATRPS5B component *(uS7) of small ribosomal-subunit (SSU)... 0.13 OrthoFinder output from all 47 species
Tin_g01481 RPS5B, ATRPS5B component *(uS7) of small ribosomal-subunit (SSU)... 0.13 OrthoFinder output from all 47 species
Zm00001e025608_P002 RPS5B, ATRPS5B,... component RPS5 of SSU proteome 0.3 OrthoFinder output from all 47 species
Zm00001e031425_P002 AML1, RPS5A,... component RPS5 of SSU proteome 0.25 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006417 regulation of translation IEP HCCA
BP GO:0006448 regulation of translational elongation IEP HCCA
BP GO:0006449 regulation of translational termination IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0010608 post-transcriptional regulation of gene expression IEP HCCA
BP GO:0010628 positive regulation of gene expression IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
BP GO:0034248 regulation of amide metabolic process IEP HCCA
BP GO:0034250 positive regulation of amide metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
MF GO:0043021 ribonucleoprotein complex binding IEP HCCA
MF GO:0043022 ribosome binding IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043243 positive regulation of protein-containing complex disassembly IEP HCCA
BP GO:0043244 regulation of protein-containing complex disassembly IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0045727 positive regulation of translation IEP HCCA
BP GO:0045901 positive regulation of translational elongation IEP HCCA
BP GO:0045905 positive regulation of translational termination IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051130 positive regulation of cellular component organization IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051247 positive regulation of protein metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR023798 Ribosomal_S7_dom 58 200
No external refs found!