ChrUn.fgenesh.mRNA.12 (ORF158)

Aliases : ORF158

Description : RNA-directed DNA polymerase homolog OS=Oenothera berteroana (sp|p31843|rrpo_oenbe : 152.0)

Gene families : OG0000001 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: ChrUn.fgenesh.mRNA.12
Cluster	HCCA: Cluster_5

Target	Alias	Description	ECC score	Gene Family Method
Aspi01Gene04665.t1	Aspi01Gene04665	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene09734.t1	Aspi01Gene09734	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene58737.t1	Aspi01Gene58737	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene60385.t1	ORF107E, Aspi01Gene60385	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g17806	ORF158	not classified & original description: none	0.04	OrthoFinder output from all 47 species
ChrSy.fgenesh.mRNA.48	No alias	RNA-directed DNA polymerase homolog OS=Oenothera...	0.11	OrthoFinder output from all 47 species
ChrSy.fgenesh.mRNA.57	No alias	no hits & (original description: none)	0.12	OrthoFinder output from all 47 species
ChrSy.fgenesh.mRNA.60	ORF158	RNA-directed DNA polymerase homolog OS=Oenothera...	0.06	OrthoFinder output from all 47 species
ChrUn.fgenesh.mRNA.11	No alias	RNA-directed DNA polymerase homolog OS=Oenothera...	0.06	OrthoFinder output from all 47 species
ChrUn.fgenesh.mRNA.5	No alias	no hits & (original description: none)	0.08	OrthoFinder output from all 47 species
ChrUn.fgenesh.mRNA.52	ORF158	RNA-directed DNA polymerase homolog OS=Oenothera...	0.09	OrthoFinder output from all 47 species
ChrUn.fgenesh.mRNA.7	No alias	no hits & (original description: none)	0.13	OrthoFinder output from all 47 species
Gb_39777	No alias	Uncharacterized mitochondrial protein AtMg00860...	0.03	OrthoFinder output from all 47 species
LOC_Os12g27430.1	LOC_Os12g27430	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR041588	Integrase_H2C2	1356	1412
IPR005162	Retrotrans_gag_dom	411	506
IPR041373	RT_RNaseH	1146	1245
IPR001584	Integrase_cat-core	1436	1543
IPR000477	RT_dom	899	1057

External Links

No external refs found!

ChrUn.fgenesh.mRNA.12 (ORF158)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation