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Description : protein factor NHP2L1/SNU13 of U4/U6 small nuclear ribonucleoprotein particle (snRNP)
Gene families : OG0004004 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004004_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: MA_99460g0010 | |
| Cluster | HCCA: Cluster_110 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT5G08180 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.16 | OrthoFinder output from all 47 species | |
| Adi_g025845 | No alias | core component *(NHP2) of H/ACA snoRNP RNA... | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g00171 | No alias | core component *(NHP2) of H/ACA snoRNP RNA... | 0.04 | OrthoFinder output from all 47 species | |
| Aspi01Gene31865.t1 | Aspi01Gene31865 | core component *(NHP2) of H/ACA snoRNP RNA... | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0078.g038143 | No alias | core component *(NHP2) of H/ACA snoRNP RNA... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.34G059100.1 | Ceric.34G059100 | core component *(NHP2) of H/ACA snoRNP RNA... | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g00179 | No alias | core component *(NHP2) of H/ACA snoRNP RNA... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01008187001 | No alias | RNA processing.RNA splicing.U2-type-intron-specific... | 0.06 | OrthoFinder output from all 47 species | |
| LOC_Os06g16290.1 | LOC_Os06g16290 | protein factor NHP2L1/SNU13 of U4/U6 small nuclear... | 0.09 | OrthoFinder output from all 47 species | |
| Msp_g06354 | No alias | core component *(NHP2) of H/ACA snoRNP RNA... | 0.05 | OrthoFinder output from all 47 species | |
| Sam_g02663 | No alias | core component *(NHP2) of H/ACA snoRNP RNA... | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g08234 | No alias | core component *(NHP2) of H/ACA snoRNP RNA... | 0.01 | OrthoFinder output from all 47 species | |
| Smo98161 | No alias | RNA processing.RNA splicing.U2-type-intron-specific... | 0.06 | OrthoFinder output from all 47 species | |
| Solyc12g038980.2.1 | Solyc12g038980 | protein factor NHP2L1/SNU13 of U4/U6 small nuclear... | 0.12 | OrthoFinder output from all 47 species | |
| Zm00001e015712_P001 | Zm00001e015712 | protein factor NHP2L1/SNU13 of U4/U6 small nuclear... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e023454_P001 | Zm00001e023454 | protein factor NHP2L1/SNU13 of U4/U6 small nuclear... | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000786 | nucleosome | IEP | HCCA |
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0003735 | structural constituent of ribosome | IEP | HCCA |
| MF | GO:0005198 | structural molecule activity | IEP | HCCA |
| CC | GO:0005575 | cellular_component | IEP | HCCA |
| CC | GO:0005840 | ribosome | IEP | HCCA |
| BP | GO:0006412 | translation | IEP | HCCA |
| BP | GO:0006457 | protein folding | IEP | HCCA |
| BP | GO:0006518 | peptide metabolic process | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| BP | GO:0009058 | biosynthetic process | IEP | HCCA |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| CC | GO:0015934 | large ribosomal subunit | IEP | HCCA |
| CC | GO:0016272 | prefoldin complex | IEP | HCCA |
| BP | GO:0019538 | protein metabolic process | IEP | HCCA |
| CC | GO:0032991 | protein-containing complex | IEP | HCCA |
| CC | GO:0032993 | protein-DNA complex | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0043043 | peptide biosynthetic process | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| CC | GO:0043226 | organelle | IEP | HCCA |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | HCCA |
| CC | GO:0043229 | intracellular organelle | IEP | HCCA |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | HCCA |
| BP | GO:0043603 | amide metabolic process | IEP | HCCA |
| BP | GO:0043604 | amide biosynthetic process | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| BP | GO:0044238 | primary metabolic process | IEP | HCCA |
| BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
| CC | GO:0044391 | ribosomal subunit | IEP | HCCA |
| CC | GO:0044815 | DNA packaging complex | IEP | HCCA |
| MF | GO:0051082 | unfolded protein binding | IEP | HCCA |
| BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
| CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | HCCA |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |