Aliases : STM, SHM1, SHMT1
Description : serine hydroxymethyltransferase
Gene families : OG0000518 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000518_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00046p00219150 | STM, SHM1,... | Photosynthesis.photorespiration.serine hydroxymethyltransferase | 0.08 | OrthoFinder output from all 47 species | |
AT4G37930 | STM, SHM1, SHMT1 | serine transhydroxymethyltransferase 1 | 0.13 | OrthoFinder output from all 47 species | |
Adi_g081286 | STM, SHM1, SHMT1 | EC_2.1 transferase transferring one-carbon group &... | 0.04 | OrthoFinder output from all 47 species | |
Aev_g09895 | STM, SHM1, SHMT1 | EC_2.1 transferase transferring one-carbon group &... | 0.08 | OrthoFinder output from all 47 species | |
Ala_g06688 | STM, SHM1, SHMT1 | EC_2.1 transferase transferring one-carbon group &... | 0.11 | OrthoFinder output from all 47 species | |
Als_g06300 | STM, SHM1, SHMT1 | EC_2.1 transferase transferring one-carbon group &... | 0.08 | OrthoFinder output from all 47 species | |
Aob_g16059 | STM, SHM1, SHMT1 | EC_2.1 transferase transferring one-carbon group &... | 0.07 | OrthoFinder output from all 47 species | |
Aop_g11376 | STM, SHM1, SHMT1 | EC_2.1 transferase transferring one-carbon group &... | 0.11 | OrthoFinder output from all 47 species | |
Aspi01Gene56437.t1 | STM, SHM1,... | EC_2.1 transferase transferring one-carbon group &... | 0.05 | OrthoFinder output from all 47 species | |
Azfi_s0102.g044437 | STM, SHM1, SHMT1 | EC_2.1 transferase transferring one-carbon group &... | 0.06 | OrthoFinder output from all 47 species | |
Cba_g12674 | STM, SHM1, SHMT1 | EC_2.1 transferase transferring one-carbon group &... | 0.09 | OrthoFinder output from all 47 species | |
Ceric.28G027700.1 | STM, SHM1,... | EC_2.1 transferase transferring one-carbon group &... | 0.1 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00000144.148 | STM, SHM1, SHMT1 | Enzyme classification.EC_2 transferases.EC_2.1... | 0.01 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00001130.31 | SHM4 | Enzyme classification.EC_2 transferases.EC_2.1... | 0.02 | OrthoFinder output from all 47 species | |
Cre16.g664550 | STM, SHM1, SHMT1 | Amino acid metabolism.biosynthesis.serine... | 0.02 | OrthoFinder output from all 47 species | |
Dac_g28484 | STM, SHM1, SHMT1 | EC_2.1 transferase transferring one-carbon group &... | 0.09 | OrthoFinder output from all 47 species | |
Dcu_g14554 | STM, SHM1, SHMT1 | EC_2.1 transferase transferring one-carbon group &... | 0.08 | OrthoFinder output from all 47 species | |
Dcu_g21464 | STM, SHM1, SHMT1 | EC_2.1 transferase transferring one-carbon group &... | 0.06 | OrthoFinder output from all 47 species | |
Dde_g20927 | STM, SHM1, SHMT1 | EC_2.1 transferase transferring one-carbon group &... | 0.06 | OrthoFinder output from all 47 species | |
Ehy_g16256 | STM, SHM1, SHMT1 | EC_2.1 transferase transferring one-carbon group &... | 0.07 | OrthoFinder output from all 47 species | |
GSVIVT01003859001 | STM, SHM1, SHMT1 | Photosynthesis.photorespiration.serine hydroxymethyltransferase | 0.09 | OrthoFinder output from all 47 species | |
GSVIVT01003862001 | STM, SHM1, SHMT1 | Serine hydroxymethyltransferase, mitochondrial... | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os03g52840.1 | STM, SHM1,... | serine hydroxymethyltransferase | 0.08 | OrthoFinder output from all 47 species | |
Len_g12401 | STM, SHM1, SHMT1 | EC_2.1 transferase transferring one-carbon group &... | 0.09 | OrthoFinder output from all 47 species | |
Lfl_g04055 | STM, SHM1, SHMT1 | EC_2.1 transferase transferring one-carbon group &... | 0.07 | OrthoFinder output from all 47 species | |
Mp2g08370.1 | STM, SHM1, SHMT1 | serine hydroxymethyltransferase | 0.06 | OrthoFinder output from all 47 species | |
Msp_g48544 | STM, SHM1, SHMT1 | EC_2.1 transferase transferring one-carbon group &... | 0.08 | OrthoFinder output from all 47 species | |
Nbi_g03063 | STM, SHM1, SHMT1 | EC_2.1 transferase transferring one-carbon group &... | 0.12 | OrthoFinder output from all 47 species | |
Ore_g09056 | STM, SHM1, SHMT1 | EC_2.1 transferase transferring one-carbon group &... | 0.06 | OrthoFinder output from all 47 species | |
Pir_g00993 | STM, SHM1, SHMT1 | EC_2.1 transferase transferring one-carbon group &... | 0.09 | OrthoFinder output from all 47 species | |
Pnu_g10887 | STM, SHM1, SHMT1 | EC_2.1 transferase transferring one-carbon group &... | 0.05 | OrthoFinder output from all 47 species | |
Pp3c1_27990V3.1 | STM, SHM1,... | serine transhydroxymethyltransferase 1 | 0.01 | OrthoFinder output from all 47 species | |
Ppi_g14402 | STM, SHM1, SHMT1 | EC_2.1 transferase transferring one-carbon group &... | 0.05 | OrthoFinder output from all 47 species | |
Sam_g36946 | No alias | EC_2.1 transferase transferring one-carbon group &... | 0.08 | OrthoFinder output from all 47 species | |
Sam_g48680 | No alias | EC_2.1 transferase transferring one-carbon group &... | 0.02 | OrthoFinder output from all 47 species | |
Smo270566 | STM, SHM1, SHMT1 | Photosynthesis.photorespiration.serine hydroxymethyltransferase | 0.05 | OrthoFinder output from all 47 species | |
Solyc02g091560.3.1 | STM, SHM1,... | serine hydroxymethyltransferase | 0.08 | OrthoFinder output from all 47 species | |
Tin_g10060 | STM, SHM1, SHMT1 | EC_2.1 transferase transferring one-carbon group &... | 0.1 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | HCCA |
MF | GO:0003824 | catalytic activity | IEP | HCCA |
MF | GO:0004089 | carbonate dehydratase activity | IEP | HCCA |
MF | GO:0004497 | monooxygenase activity | IEP | HCCA |
MF | GO:0004618 | phosphoglycerate kinase activity | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
BP | GO:0006081 | cellular aldehyde metabolic process | IEP | HCCA |
BP | GO:0006082 | organic acid metabolic process | IEP | HCCA |
BP | GO:0006090 | pyruvate metabolic process | IEP | HCCA |
BP | GO:0006091 | generation of precursor metabolites and energy | IEP | HCCA |
BP | GO:0006096 | glycolytic process | IEP | HCCA |
BP | GO:0006165 | nucleoside diphosphate phosphorylation | IEP | HCCA |
BP | GO:0006644 | phospholipid metabolic process | IEP | HCCA |
BP | GO:0006757 | ATP generation from ADP | IEP | HCCA |
BP | GO:0008654 | phospholipid biosynthetic process | IEP | HCCA |
BP | GO:0009132 | nucleoside diphosphate metabolic process | IEP | HCCA |
BP | GO:0009135 | purine nucleoside diphosphate metabolic process | IEP | HCCA |
BP | GO:0009141 | nucleoside triphosphate metabolic process | IEP | HCCA |
BP | GO:0009144 | purine nucleoside triphosphate metabolic process | IEP | HCCA |
BP | GO:0009150 | purine ribonucleotide metabolic process | IEP | HCCA |
BP | GO:0009179 | purine ribonucleoside diphosphate metabolic process | IEP | HCCA |
BP | GO:0009185 | ribonucleoside diphosphate metabolic process | IEP | HCCA |
BP | GO:0009199 | ribonucleoside triphosphate metabolic process | IEP | HCCA |
BP | GO:0009205 | purine ribonucleoside triphosphate metabolic process | IEP | HCCA |
BP | GO:0009240 | isopentenyl diphosphate biosynthetic process | IEP | HCCA |
BP | GO:0009259 | ribonucleotide metabolic process | IEP | HCCA |
MF | GO:0010277 | chlorophyllide a oxygenase [overall] activity | IEP | HCCA |
BP | GO:0016052 | carbohydrate catabolic process | IEP | HCCA |
MF | GO:0016491 | oxidoreductase activity | IEP | HCCA |
MF | GO:0016701 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen | IEP | HCCA |
MF | GO:0016703 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) | IEP | HCCA |
MF | GO:0016725 | oxidoreductase activity, acting on CH or CH2 groups | IEP | HCCA |
MF | GO:0016726 | oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor | IEP | HCCA |
MF | GO:0016774 | phosphotransferase activity, carboxyl group as acceptor | IEP | HCCA |
MF | GO:0016836 | hydro-lyase activity | IEP | HCCA |
MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
BP | GO:0019288 | isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | IEP | HCCA |
BP | GO:0019637 | organophosphate metabolic process | IEP | HCCA |
BP | GO:0019682 | glyceraldehyde-3-phosphate metabolic process | IEP | HCCA |
BP | GO:0019693 | ribose phosphate metabolic process | IEP | HCCA |
BP | GO:0019752 | carboxylic acid metabolic process | IEP | HCCA |
MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
BP | GO:0032787 | monocarboxylic acid metabolic process | IEP | HCCA |
MF | GO:0036094 | small molecule binding | IEP | HCCA |
BP | GO:0043436 | oxoacid metabolic process | IEP | HCCA |
BP | GO:0044281 | small molecule metabolic process | IEP | HCCA |
BP | GO:0046031 | ADP metabolic process | IEP | HCCA |
BP | GO:0046034 | ATP metabolic process | IEP | HCCA |
BP | GO:0046490 | isopentenyl diphosphate metabolic process | IEP | HCCA |
BP | GO:0046939 | nucleotide phosphorylation | IEP | HCCA |
BP | GO:0050992 | dimethylallyl diphosphate biosynthetic process | IEP | HCCA |
BP | GO:0050993 | dimethylallyl diphosphate metabolic process | IEP | HCCA |
MF | GO:0051287 | NAD binding | IEP | HCCA |
MF | GO:0051536 | iron-sulfur cluster binding | IEP | HCCA |
MF | GO:0051537 | 2 iron, 2 sulfur cluster binding | IEP | HCCA |
MF | GO:0051540 | metal cluster binding | IEP | HCCA |
MF | GO:0051745 | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity | IEP | HCCA |
BP | GO:0055114 | obsolete oxidation-reduction process | IEP | HCCA |
BP | GO:0090407 | organophosphate biosynthetic process | IEP | HCCA |
BP | GO:1901135 | carbohydrate derivative metabolic process | IEP | HCCA |
MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR039429 | SHMT-like_dom | 30 | 307 |
No external refs found! |