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  5. MA_9896333g0010

MA_9896333g0010 (SCL1)


Aliases : SCL1

Description : transcription factor (GRAS)


Gene families : OG0000550 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000550_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_9896333g0010
Cluster HCCA: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00043p00136400 PAT1,... RNA biosynthesis.transcriptional activation.GRAS... 0.03 OrthoFinder output from all 47 species
AMTR_s00088p00161000 PAT1,... RNA biosynthesis.transcriptional activation.GRAS... 0.02 OrthoFinder output from all 47 species
Ala_g02325 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g08305 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g12229 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g50028 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene70496.t1 PAT1, Aspi01Gene70496 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g03424 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01010007001 SCL1 RNA biosynthesis.transcriptional activation.GRAS... 0.02 OrthoFinder output from all 47 species
Gb_40278 SCL5 transcription factor (GRAS) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
InterPro domains Description Start Stop
IPR005202 TF_GRAS 2 90
No external refs found!