LOC_Os01g62650.1


Description : Pumilio homolog 2 OS=Arabidopsis thaliana (sp|q9zw06|pum2_arath : 808.0)


Gene families : OG_01_0000536 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000536_tree ,
OG_02_0000342 (LandPlants) Phylogenetic Tree(s): OG_02_0000342_tree ,
OG_03_0000990 (SeedPlants) Phylogenetic Tree(s): OG_03_0000990_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g62650.1
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00251030 evm_27.TU.AmTr_v1... Pumilio homolog 2 OS=Arabidopsis thaliana 0.02 Archaeplastida
AMTR_s00025p00181800 evm_27.TU.AmTr_v1... Pumilio homolog 5 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01016507001 No alias Pumilio homolog 1 OS=Arabidopsis thaliana 0.03 Archaeplastida
MA_10434828g0010 No alias Pumilio homolog 2 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Mp7g16700.1 No alias Pumilio homolog 1 OS=Arabidopsis thaliana... 0.06 Archaeplastida
Smo1983 No alias Pumilio homolog 1 OS=Arabidopsis thaliana 0.05 Archaeplastida
Solyc03g123980.4.1 No alias Pumilio homolog 5 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Solyc06g076340.3.1 No alias Pumilio homolog 1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e027653_P001 No alias Pumilio homolog 2 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Zm00001e029661_P001 No alias Pumilio homolog 2 OS=Arabidopsis thaliana... 0.08 Archaeplastida
AMTR_s00012p00251030 evm_27.TU.AmTr_v1... Pumilio homolog 2 OS=Arabidopsis thaliana 0.02 LandPlants
GSVIVT01016507001 No alias Pumilio homolog 1 OS=Arabidopsis thaliana 0.02 LandPlants
GSVIVT01029553001 No alias Pumilio homolog 5 OS=Arabidopsis thaliana 0.02 LandPlants
MA_10434828g0010 No alias Pumilio homolog 2 OS=Arabidopsis thaliana... 0.02 LandPlants
Mp7g16700.1 No alias Pumilio homolog 1 OS=Arabidopsis thaliana... 0.05 LandPlants
Smo1983 No alias Pumilio homolog 1 OS=Arabidopsis thaliana 0.04 LandPlants
Solyc03g123980.4.1 No alias Pumilio homolog 5 OS=Arabidopsis thaliana... 0.03 LandPlants
Solyc06g076340.3.1 No alias Pumilio homolog 1 OS=Arabidopsis thaliana... 0.02 LandPlants
Zm00001e027653_P001 No alias Pumilio homolog 2 OS=Arabidopsis thaliana... 0.03 LandPlants
Zm00001e029661_P001 No alias Pumilio homolog 2 OS=Arabidopsis thaliana... 0.06 LandPlants
GSVIVT01016507001 No alias Pumilio homolog 1 OS=Arabidopsis thaliana 0.02 SeedPlants
Solyc06g076340.3.1 No alias Pumilio homolog 1 OS=Arabidopsis thaliana... 0.02 SeedPlants
Zm00001e027653_P001 No alias Pumilio homolog 2 OS=Arabidopsis thaliana... 0.03 SeedPlants
Zm00001e029661_P001 No alias Pumilio homolog 2 OS=Arabidopsis thaliana... 0.04 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 835 866
IPR001313 Pumilio_RNA-bd_rpt 943 969
IPR001313 Pumilio_RNA-bd_rpt 871 902
IPR001313 Pumilio_RNA-bd_rpt 798 829
IPR001313 Pumilio_RNA-bd_rpt 992 1018
IPR001313 Pumilio_RNA-bd_rpt 726 759
IPR001313 Pumilio_RNA-bd_rpt 907 933
IPR001313 Pumilio_RNA-bd_rpt 764 793
IPR012940 NABP 310 723
No external refs found!