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  5. MA_96691g0010

MA_96691g0010


Description : plastidial mRNA processing factor (PPR10)


Gene families : OG0006045 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006045_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_96691g0010

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00034550 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g02860... 0.03 OrthoFinder output from all 47 species
AMTR_s00029p00034670 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g02860... 0.03 OrthoFinder output from all 47 species
AT5G02860 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g060882 No alias stability factor *(PPR10) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g02296 No alias stability factor *(PPR10) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01037880001 No alias Pentatricopeptide repeat-containing protein At5g02860... 0.05 OrthoFinder output from all 47 species
Gb_07042 No alias plastidial mRNA processing factor (PPR10) 0.04 OrthoFinder output from all 47 species
LOC_Os07g40120.1 LOC_Os07g40120 plastidial mRNA processing factor (PPR10) 0.03 OrthoFinder output from all 47 species
MA_6146g0010 No alias plastidial mRNA processing factor (PPR10) 0.03 OrthoFinder output from all 47 species
MA_8893308g0010 No alias plastidial mRNA processing factor (PPR10) 0.02 OrthoFinder output from all 47 species
Mp8g08650.1 No alias plastidial mRNA processing factor (PPR10) 0.04 OrthoFinder output from all 47 species
Ppi_g17870 No alias stability factor *(PPR10) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g13568 No alias stability factor *(PPR10) & original description: none 0.05 OrthoFinder output from all 47 species
Solyc01g107320.3.1 Solyc01g107320 plastidial mRNA processing factor (PPR10) 0.03 OrthoFinder output from all 47 species
Spa_g11381 No alias stability factor *(PPR10) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006457 protein folding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009536 plastid IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 175 198
IPR002885 Pentatricopeptide_repeat 730 775
IPR002885 Pentatricopeptide_repeat 555 604
IPR002885 Pentatricopeptide_repeat 485 531
IPR002885 Pentatricopeptide_repeat 797 822
IPR002885 Pentatricopeptide_repeat 299 359
IPR002885 Pentatricopeptide_repeat 650 708
IPR002885 Pentatricopeptide_repeat 364 392
IPR002885 Pentatricopeptide_repeat 404 464
IPR002885 Pentatricopeptide_repeat 228 287
No external refs found!