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  5. MA_95662g0020

MA_95662g0020 (PUB25)


Aliases : PUB25

Description : U-box domain-containing protein 27 OS=Arabidopsis thaliana (sp|q9flf4|pub27_arath : 110.0)


Gene families : OG0000127 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000127_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_95662g0020

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00030p00130440 CMPG2, ATCMPG2,... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
AT2G35930 PUB23 plant U-box 23 0.03 OrthoFinder output from all 47 species
AT3G02840 No alias ARM repeat superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G11840 PUB24 plant U-box 24 0.04 OrthoFinder output from all 47 species
AT3G19380 PUB25 plant U-box 25 0.05 OrthoFinder output from all 47 species
Ala_g02187 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g62359 PUB26 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g04412 PUB23 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene07828.t1 PUB26, Aspi01Gene07828 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene18467.t1 PUB23, Aspi01Gene18467 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene33499.t1 PUB25, Aspi01Gene33499 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene51624.t1 PUB15, Aspi01Gene51624 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.08G065500.1 PUB26, Ceric.08G065500 U-Box-group-III E3 ubiquitin ligase & original... 0.03 OrthoFinder output from all 47 species
Ceric.1Z056500.1 PUB26, Ceric.1Z056500 U-Box-group-III E3 ubiquitin ligase & original... 0.04 OrthoFinder output from all 47 species
Ceric.21G081600.1 PUB26, Ceric.21G081600 U-Box-group-III E3 ubiquitin ligase & original... 0.04 OrthoFinder output from all 47 species
Dcu_g01209 PUB23 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g01521 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g07421 PUB23 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g18954 PUB25 E3 ubiquitin ligase & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g46168 PUB23 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01011140001 PUB23 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01011616001 CMPG1, ATCMPG1 U-box domain-containing protein 20 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_02628 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
LOC_Os04g34140.1 PUB29, ATPUB29,... E3 ubiquitin ligase (PUB) 0.06 OrthoFinder output from all 47 species
LOC_Os10g03440.1 LOC_Os10g03440 U-box domain-containing protein 20 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Len_g31416 PUB23 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10425865g0010 PUB25 U-box domain-containing protein 25 OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species
MA_7928010g0010 PUB23 E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species
Mp3g22750.1 PUB26 U-box domain-containing protein 26 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Msp_g25593 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g38744 PUB26 U-Box-group-III E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g08921 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c22_7680V3.1 Pp3c22_7680 CYS, MET, PRO, and GLY protein 2 0.01 OrthoFinder output from all 47 species
Solyc01g007010.2.1 PUB22, Solyc01g007010 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc01g007020.4.1 PUB23, Solyc01g007020 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc01g007040.4.1 PUB22, Solyc01g007040 E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc01g107980.3.1 PUB26, Solyc01g107980 U-box domain-containing protein 25 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Solyc11g005700.1.1 CMPG2, ATCMPG2,... E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
Solyc11g006030.1.1 Solyc11g006030 U-box domain-containing protein 21 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Spa_g47017 PUB23 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e000999_P001 Zm00001e000999 U-box domain-containing protein 20 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Zm00001e002598_P001 Zm00001e002598 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e007109_P001 PUB23, Zm00001e007109 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e008167_P001 PUB23, Zm00001e008167 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e015763_P001 Zm00001e015763 U-box domain-containing protein 21 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e022698_P001 PUB26, Zm00001e022698 U-box domain-containing protein 25 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e036030_P001 Zm00001e036030 U-box domain-containing protein 21 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e039417_P001 PUB23, Zm00001e039417 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR003613 Ubox_domain 12 82
No external refs found!