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MA_94706g0010


Description : NUP50 nucleoporin of nuclear pore complex


Gene families : OG0003460 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003460_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_94706g0010

Target Alias Description ECC score Gene Family Method Actions
Cba_g68744 No alias nucleoporin of nuclear pore complex *(NUP50) & original... 0.02 OrthoFinder output from all 47 species
Gb_12922 No alias NUP50 nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
LOC_Os05g28190.1 LOC_Os05g28190 NUP50 nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
Len_g15298 No alias nucleoporin of nuclear pore complex *(NUP50) & original... 0.03 OrthoFinder output from all 47 species
Mp5g18610.1 No alias NUP50 nucleoporin of nuclear pore complex 0.02 OrthoFinder output from all 47 species
Pir_g08769 No alias nucleoporin of nuclear pore complex *(NUP50) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g15742 No alias nucleoporin of nuclear pore complex *(NUP50) & original... 0.02 OrthoFinder output from all 47 species
Solyc06g066740.3.1 Solyc06g066740 NUP50 nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEA Interproscan
BP GO:0046907 intracellular transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
InterPro domains Description Start Stop
IPR000156 Ran_bind_dom 317 432
IPR015007 NUP2/50/61 13 70
No external refs found!