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  5. MA_94328g0020

MA_94328g0020 (GAMMA-H2AX, H2AXB,...)


Aliases : GAMMA-H2AX, H2AXB, HTA3, G-H2AX

Description : histone (H2A)


Gene families : OG0000117 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000117_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_94328g0020
Cluster HCCA: Cluster_173

Target Alias Description ECC score Gene Family Method Actions
AT1G51060 HTA10 histone H2A 10 0.04 OrthoFinder output from all 47 species
AT1G54690 GAMMA-H2AX,... gamma histone variant H2AX 0.05 OrthoFinder output from all 47 species
AT5G27670 HTA7 histone H2A 7 0.02 OrthoFinder output from all 47 species
AT5G59870 HTA6 histone H2A 6 0.02 OrthoFinder output from all 47 species
Adi_g003557 HTA6 histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g011160 HTA7 histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g011320 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g047730 HTA7 histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g078410 HTA13 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g082134 HTA6 histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g086789 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g08544 GAMMA-H2AX,... histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g14593 GAMMA-H2AX,... histone *(H2A) & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g17952 HTA7 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g23857 HTA7 histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g11673 GAMMA-H2AX,... histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g28150 GAMMA-H2AX,... histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0005.g009474 GAMMA-H2AX,... histone *(H2A) & original description: CDS=131-538 0.05 OrthoFinder output from all 47 species
Ceric.25G059300.1 GAMMA-H2AX,... histone *(H2A) & original description: pacid=50594046... 0.06 OrthoFinder output from all 47 species
Ceric.32G068500.1 GAMMA-H2AX,... histone *(H2A) & original description: pacid=50597336... 0.03 OrthoFinder output from all 47 species
Ceric.37G036600.1 HTA7, Ceric.37G036600 histone *(H2A) & original description: pacid=50616072... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001085.4 GAMMA-H2AX,... Chromatin organisation.histones.H2A-type histone 0.01 OrthoFinder output from all 47 species
Dac_g13937 GAMMA-H2AX,... histone *(H2A) & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g34896 GAMMA-H2AX,... histone *(H2A) & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g05168 GAMMA-H2AX,... histone *(H2A) & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g42744 GAMMA-H2AX,... histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g50952 GAMMA-H2AX,... histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g12969 GAMMA-H2AX,... histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g11405 HTA7 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g11978 GAMMA-H2AX,... histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g28662 HTA6 histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01011034001 GAMMA-H2AX,... Chromatin organisation.histones.H2A-type histone 0.05 OrthoFinder output from all 47 species
LOC_Os03g17100.1 HTA12, LOC_Os03g17100 histone (H2A) 0.03 OrthoFinder output from all 47 species
LOC_Os12g34510.1 GAMMA-H2AX,... histone (H2A) 0.02 OrthoFinder output from all 47 species
Len_g05644 RAT5, HTA1, ATHTA1 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g14652 GAMMA-H2AX,... histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g55104 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g21938 HTA6 histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g39719 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g39892 HTA10 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Mp2g00760.1 GAMMA-H2AX,... histone (H2A) 0.02 OrthoFinder output from all 47 species
Msp_g11191 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g29485 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g37655 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g00069 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g28966 GAMMA-H2AX,... histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g31985 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g10764 No alias histone *(H2A) & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g10765 No alias histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g21361 No alias histone *(H2A) & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g29426 No alias histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g48398 No alias histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Smo73637 GAMMA-H2AX,... Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder output from all 47 species
Smo76653 HTA2 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder output from all 47 species
Solyc01g099410.3.1 HTA7, Solyc01g099410 histone (H2A) 0.05 OrthoFinder output from all 47 species
Solyc03g005220.4.1 GAMMA-H2AX,... histone (H2A) 0.02 OrthoFinder output from all 47 species
Solyc09g010400.3.1 HTA12, Solyc09g010400 histone (H2A) 0.02 OrthoFinder output from all 47 species
Solyc09g082710.3.1 GAMMA-H2AX,... histone (H2A) 0.03 OrthoFinder output from all 47 species
Solyc10g006560.4.1 HTA10, Solyc10g006560 histone (H2A) 0.02 OrthoFinder output from all 47 species
Solyc11g073250.2.1 HTA12, Solyc11g073250 histone (H2A) 0.02 OrthoFinder output from all 47 species
Spa_g03104 GAMMA-H2AX,... histone *(H2A) & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g03105 GAMMA-H2AX,... histone *(H2A) & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g03210 HTA6 histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g03519 GAMMA-H2AX,... histone *(H2A) & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g03522 GAMMA-H2AX,... histone *(H2A) & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g03889 HTA7 histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g16293 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g29751 HTA6 histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g45415 HTA6 histone *(H2A) & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g45749 HTA7 histone *(H2A) & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g46345 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g48382 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e011643_P001 HTA6, Zm00001e011643 histone (H2A) 0.02 OrthoFinder output from all 47 species
Zm00001e034815_P001 HTA12, Zm00001e034815 histone (H2A) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003779 actin binding IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR032454 Histone_H2A_C 95 128
IPR007125 Histone_H2A/H2B/H3 11 92
No external refs found!