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  5. MA_9431878g0010

MA_9431878g0010


Description : component Sm-D3 of U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex


Gene families : OG0003441 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003441_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_9431878g0010

Target Alias Description ECC score Gene Family Method Actions
AT1G76300 SmD3 snRNP core protein SMD3 0.04 OrthoFinder output from all 47 species
Adi_g022523 No alias component *(Sm-D3) of U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder output from all 47 species
Aev_g46278 No alias component *(Sm-D3) of U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020912.17 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.01 OrthoFinder output from all 47 species
Cre10.g455300 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder output from all 47 species
Dac_g33659 No alias component *(Sm-D3) of U1/U2/U4/U5-associated Sm... 0.04 OrthoFinder output from all 47 species
Mp1g11210.1 No alias component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... 0.02 OrthoFinder output from all 47 species
Sam_g19522 No alias component *(Sm-D3) of U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
Sam_g44867 No alias component *(Sm-D3) of U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
Solyc02g084020.3.1 Solyc02g084020 component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!