LOC_Os01g58020.1


Description : Ribulose bisphosphate carboxylase large chain OS=Oryza sativa subsp. indica (sp|p0c511|rbl_orysi : 371.0)


Gene families : OG_01_0001030 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001030_tree ,
OG_02_0000707 (LandPlants) Phylogenetic Tree(s): OG_02_0000707_tree ,
OG_03_0000483 (SeedPlants) Phylogenetic Tree(s): OG_03_0000483_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g58020.1
Cluster HCCA: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272640 evm_27.TU.AmTr_v1... Ribulose bisphosphate carboxylase large chain OS=Nymphaea alba 0.12 Archaeplastida
AMTR_s00012p00184400 evm_27.TU.AmTr_v1... Ribulose bisphosphate carboxylase large chain... 0.12 Archaeplastida
AMTR_s00606p00006850 evm_27.TU.AmTr_v1... Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.12 Archaeplastida
ATCG00490 RBCL ribulose-bisphosphate carboxylases 0.29 Archaeplastida
ATMG00280 ORF110A Ribulose bisphosphate carboxylase large chain, catalytic domain 0.03 Archaeplastida
GSVIVT01013856001 No alias Ribulose bisphosphate carboxylase large chain (Fragment)... 0.09 Archaeplastida
GSVIVT01022403001 No alias Ribulose bisphosphate carboxylase large chain OS=Sesbania sesban 0.09 Archaeplastida
Gb_07644 No alias Ribulose bisphosphate carboxylase large chain... 0.13 Archaeplastida
Gb_15502 No alias Ribulose bisphosphate carboxylase large chain... 0.13 Archaeplastida
Gb_18620 No alias Ribulose bisphosphate carboxylase large chain... 0.05 Archaeplastida
Gb_25934 No alias Ribulose bisphosphate carboxylase large chain... 0.03 Archaeplastida
Gb_34523 No alias Ribulose bisphosphate carboxylase large chain (Fragment)... 0.17 Archaeplastida
Gb_37464 No alias Ribulose bisphosphate carboxylase large chain... 0.13 Archaeplastida
MA_103636g0010 No alias Ribulose bisphosphate carboxylase large chain... 0.03 Archaeplastida
Mp3g01300.1 No alias no hits & (original description: none) 0.08 Archaeplastida
Smo137874 No alias Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.23 Archaeplastida
Solyc00g500063.1.1 No alias large subunit of ribulose-1,5-bisphosphat... 0.34 Archaeplastida
Solyc07g021200.1.1 No alias Ribulose bisphosphate carboxylase large chain (Fragment)... 0.33 Archaeplastida
Solyc12g062540.3.1 No alias Ribulose bisphosphate carboxylase large chain (Fragment)... 0.03 Archaeplastida
Solyc12g062550.1.1 No alias Ribulose bisphosphate carboxylase large chain OS=Solanum... 0.06 Archaeplastida
Zm00001e002755_P001 No alias Ribulose bisphosphate carboxylase large chain OS=Zea... 0.07 Archaeplastida
Zm00001e010393_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e031080_P001 No alias Ribulose bisphosphate carboxylase large chain OS=Zea... 0.21 Archaeplastida
Zm00001e042029_P001 No alias large subunit of ribulose-1,5-bisphosphat... 0.2 Archaeplastida
Zm00001e042051_P001 No alias large subunit of ribulose-1,5-bisphosphat... 0.19 Archaeplastida
Zm00001e042083_P001 No alias large subunit of ribulose-1,5-bisphosphat... 0.21 Archaeplastida
Zm00001e042095_P001 No alias large subunit of ribulose-1,5-bisphosphat... 0.21 Archaeplastida
Zm00001e042351_P001 No alias no hits & (original description: none) 0.09 Archaeplastida
Zm00001e042403_P001 No alias large subunit of ribulose-1,5-bisphosphat... 0.21 Archaeplastida
Zm00001e042465_P001 No alias Ribulose bisphosphate carboxylase large chain OS=Zea... 0.03 Archaeplastida
AMTR_s00001p00272640 evm_27.TU.AmTr_v1... Ribulose bisphosphate carboxylase large chain OS=Nymphaea alba 0.12 LandPlants
AMTR_s00012p00184400 evm_27.TU.AmTr_v1... Ribulose bisphosphate carboxylase large chain... 0.12 LandPlants
AMTR_s00606p00006850 evm_27.TU.AmTr_v1... Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.12 LandPlants
AT2G07732 No alias Ribulose bisphosphate carboxylase large chain, catalytic domain 0.02 LandPlants
ATCG00490 RBCL ribulose-bisphosphate carboxylases 0.28 LandPlants
ATMG00280 ORF110A Ribulose bisphosphate carboxylase large chain, catalytic domain 0.03 LandPlants
GSVIVT01013856001 No alias Ribulose bisphosphate carboxylase large chain (Fragment)... 0.09 LandPlants
GSVIVT01022403001 No alias Ribulose bisphosphate carboxylase large chain OS=Sesbania sesban 0.09 LandPlants
Gb_07644 No alias Ribulose bisphosphate carboxylase large chain... 0.12 LandPlants
Gb_15502 No alias Ribulose bisphosphate carboxylase large chain... 0.12 LandPlants
Gb_18620 No alias Ribulose bisphosphate carboxylase large chain... 0.05 LandPlants
Gb_25934 No alias Ribulose bisphosphate carboxylase large chain... 0.03 LandPlants
Gb_34523 No alias Ribulose bisphosphate carboxylase large chain (Fragment)... 0.17 LandPlants
Gb_37464 No alias Ribulose bisphosphate carboxylase large chain... 0.13 LandPlants
MA_103636g0010 No alias Ribulose bisphosphate carboxylase large chain... 0.03 LandPlants
Mp3g01300.1 No alias no hits & (original description: none) 0.08 LandPlants
Smo137874 No alias Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.22 LandPlants
Solyc00g500063.1.1 No alias large subunit of ribulose-1,5-bisphosphat... 0.33 LandPlants
Solyc07g021200.1.1 No alias Ribulose bisphosphate carboxylase large chain (Fragment)... 0.31 LandPlants
Solyc12g062540.3.1 No alias Ribulose bisphosphate carboxylase large chain (Fragment)... 0.03 LandPlants
Solyc12g062550.1.1 No alias Ribulose bisphosphate carboxylase large chain OS=Solanum... 0.06 LandPlants
Zm00001e002755_P001 No alias Ribulose bisphosphate carboxylase large chain OS=Zea... 0.07 LandPlants
Zm00001e010393_P001 No alias no hits & (original description: none) 0.04 LandPlants
Zm00001e031080_P001 No alias Ribulose bisphosphate carboxylase large chain OS=Zea... 0.2 LandPlants
Zm00001e042029_P001 No alias large subunit of ribulose-1,5-bisphosphat... 0.19 LandPlants
Zm00001e042051_P001 No alias large subunit of ribulose-1,5-bisphosphat... 0.19 LandPlants
Zm00001e042083_P001 No alias large subunit of ribulose-1,5-bisphosphat... 0.2 LandPlants
Zm00001e042095_P001 No alias large subunit of ribulose-1,5-bisphosphat... 0.21 LandPlants
Zm00001e042121_P001 No alias no hits & (original description: none) 0.02 LandPlants
Zm00001e042351_P001 No alias no hits & (original description: none) 0.09 LandPlants
Zm00001e042403_P001 No alias large subunit of ribulose-1,5-bisphosphat... 0.21 LandPlants
Zm00001e042465_P001 No alias Ribulose bisphosphate carboxylase large chain OS=Zea... 0.03 LandPlants
AMTR_s00001p00272640 evm_27.TU.AmTr_v1... Ribulose bisphosphate carboxylase large chain OS=Nymphaea alba 0.11 SeedPlants
AMTR_s00012p00184400 evm_27.TU.AmTr_v1... Ribulose bisphosphate carboxylase large chain... 0.11 SeedPlants
AMTR_s00606p00006850 evm_27.TU.AmTr_v1... Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.11 SeedPlants
ATCG00490 RBCL ribulose-bisphosphate carboxylases 0.27 SeedPlants
GSVIVT01013856001 No alias Ribulose bisphosphate carboxylase large chain (Fragment)... 0.09 SeedPlants
GSVIVT01022403001 No alias Ribulose bisphosphate carboxylase large chain OS=Sesbania sesban 0.09 SeedPlants
Gb_07644 No alias Ribulose bisphosphate carboxylase large chain... 0.12 SeedPlants
Gb_15502 No alias Ribulose bisphosphate carboxylase large chain... 0.12 SeedPlants
Gb_18620 No alias Ribulose bisphosphate carboxylase large chain... 0.05 SeedPlants
Gb_34523 No alias Ribulose bisphosphate carboxylase large chain (Fragment)... 0.16 SeedPlants
Gb_37464 No alias Ribulose bisphosphate carboxylase large chain... 0.12 SeedPlants
MA_103636g0010 No alias Ribulose bisphosphate carboxylase large chain... 0.02 SeedPlants
Solyc00g500063.1.1 No alias large subunit of ribulose-1,5-bisphosphat... 0.29 SeedPlants
Solyc12g062550.1.1 No alias Ribulose bisphosphate carboxylase large chain OS=Solanum... 0.06 SeedPlants
Zm00001e002755_P001 No alias Ribulose bisphosphate carboxylase large chain OS=Zea... 0.04 SeedPlants
Zm00001e010393_P001 No alias no hits & (original description: none) 0.04 SeedPlants
Zm00001e031080_P001 No alias Ribulose bisphosphate carboxylase large chain OS=Zea... 0.19 SeedPlants
Zm00001e042029_P001 No alias large subunit of ribulose-1,5-bisphosphat... 0.18 SeedPlants
Zm00001e042051_P001 No alias large subunit of ribulose-1,5-bisphosphat... 0.18 SeedPlants
Zm00001e042083_P001 No alias large subunit of ribulose-1,5-bisphosphat... 0.2 SeedPlants
Zm00001e042095_P001 No alias large subunit of ribulose-1,5-bisphosphat... 0.2 SeedPlants
Zm00001e042351_P001 No alias no hits & (original description: none) 0.08 SeedPlants
Zm00001e042403_P001 No alias large subunit of ribulose-1,5-bisphosphat... 0.2 SeedPlants
Zm00001e042465_P001 No alias Ribulose bisphosphate carboxylase large chain OS=Zea... 0.03 SeedPlants

Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEA Interproscan
BP GO:0015977 carbon fixation IEA Interproscan
MF GO:0016984 ribulose-bisphosphate carboxylase activity IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000685 RuBisCO_lsu_C 154 193
IPR017443 RuBisCO_lsu_fd_N 24 144
No external refs found!