LOC_Os01g56600.1

Description : component SRP54 of SRP (signal recognition particle) complex

Gene families : OG_01_0004006 (Archaeplastida) Phylogenetic Tree(s): OG_01_0004006_tree ,
OG_02_0004078 (LandPlants) Phylogenetic Tree(s): OG_02_0004078_tree ,
OG_03_0004081 (SeedPlants) Phylogenetic Tree(s): OG_03_0004081_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os01g56600.1
Cluster	HCCA: Cluster_176

Target	Alias	Description	ECC score	Gene Family Method
Cre13.g569200	No alias	Protein translocation.endoplasmic...	0.01	Archaeplastida
GSVIVT01017362001	No alias	Protein translocation.endoplasmic...	0.04	Archaeplastida
Gb_39090	No alias	component SRP54 of SRP (signal recognition particle) complex	0.04	Archaeplastida
MA_10429875g0010	No alias	component SRP54 of SRP (signal recognition particle) complex	0.03	Archaeplastida
Pp3s318_30V3.1	No alias	Signal recognition particle, SRP54 subunit protein	0.02	Archaeplastida
Smo158663	No alias	Protein translocation.endoplasmic...	0.02	Archaeplastida
Solyc03g116810.4.1	No alias	component SRP54 of SRP (signal recognition particle) complex	0.06	Archaeplastida
GSVIVT01017362001	No alias	Protein translocation.endoplasmic...	0.04	LandPlants
Gb_39090	No alias	component SRP54 of SRP (signal recognition particle) complex	0.04	LandPlants
MA_10429875g0010	No alias	component SRP54 of SRP (signal recognition particle) complex	0.02	LandPlants
Mp1g19000.1	No alias	component SRP54 of SRP (signal recognition particle) complex	0.01	LandPlants
Pp3s318_30V3.1	No alias	Signal recognition particle, SRP54 subunit protein	0.02	LandPlants
Smo158663	No alias	Protein translocation.endoplasmic...	0.02	LandPlants
Solyc03g116810.4.1	No alias	component SRP54 of SRP (signal recognition particle) complex	0.06	LandPlants
GSVIVT01017362001	No alias	Protein translocation.endoplasmic...	0.04	SeedPlants
Gb_39090	No alias	component SRP54 of SRP (signal recognition particle) complex	0.04	SeedPlants
MA_10429875g0010	No alias	component SRP54 of SRP (signal recognition particle) complex	0.02	SeedPlants
Solyc03g116810.4.1	No alias	component SRP54 of SRP (signal recognition particle) complex	0.05	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0001882	nucleoside binding	None	Extended
MF	GO:0001883	purine nucleoside binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006612	protein targeting to membrane	None	Extended
BP	GO:0006613	cotranslational protein targeting to membrane	None	Extended
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	ion transport	None	Extended
BP	GO:0006820	anion transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008312	7S RNA binding	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0015833	peptide transport	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032549	ribonucleoside binding	None	Extended
MF	GO:0032550	purine ribonucleoside binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
BP	GO:0034613	cellular protein localization	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0042886	amide transport	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0045047	protein targeting to ER	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
CC	GO:0048500	signal recognition particle	IEA	Interproscan
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0070972	protein localization to endoplasmic reticulum	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	None	Extended
BP	GO:0072657	protein localization to membrane	None	Extended
BP	GO:0090150	establishment of protein localization to membrane	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR004125	Signal_recog_particle_SRP54_M	327	427
IPR000897	SRP54_GTPase_dom	102	296
IPR013822	Signal_recog_particl_SRP54_hlx	6	83

External Links

No external refs found!

LOC_Os01g56600.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation