1. Home
  2. Species
  3. Picea abies
  4. Sequence
  5. MA_89559g0020

MA_89559g0020


Description : Transcription factor ABORTED MICROSPORES OS=Arabidopsis thaliana (sp|q9zvx2|ams_arath : 119.0)


Gene families : OG0006543 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006543_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_89559g0020
Cluster HCCA: Cluster_136

Target Alias Description ECC score Gene Family Method Actions
AT2G16910 AMS basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g105556 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g70080 AMS transcriptional regulator *(DYT1/AMS) & original... 0.04 OrthoFinder output from all 47 species
Dde_g46165 AMS transcriptional regulator *(DYT1/AMS) & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01013720001 AMS RNA biosynthesis.transcriptional activation.bHLH... 0.03 OrthoFinder output from all 47 species
Len_g57915 AMS transcriptional regulator *(DYT1/AMS) & original... 0.02 OrthoFinder output from all 47 species
Msp_g44010 AMS transcriptional regulator *(DYT1/AMS) & original... 0.04 OrthoFinder output from all 47 species
Nbi_g11389 AMS transcriptional regulator *(DYT1/AMS) & original... 0.04 OrthoFinder output from all 47 species
Pp3c13_14400V3.1 Pp3c13_14400 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.01 OrthoFinder output from all 47 species
Ppi_g01138 AMS transcriptional regulator *(DYT1/AMS) & original... 0.03 OrthoFinder output from all 47 species
Sam_g17963 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g49026 No alias transcriptional regulator *(DYT1/AMS) & original... 0.03 OrthoFinder output from all 47 species
Solyc08g062780.2.1 AMS, Solyc08g062780 transcription factor (bHLH) 0.05 OrthoFinder output from all 47 species
Spa_g47867 AMS transcriptional regulator *(DYT1/AMS) & original... 0.05 OrthoFinder output from all 47 species
Tin_g45475 AMS transcriptional regulator *(DYT1/AMS) & original... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0010215 cellulose microfibril organization IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
BP GO:0030198 extracellular matrix organization IEP HCCA
CC GO:0031225 obsolete anchored component of membrane IEP HCCA
BP GO:0043062 extracellular structure organization IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
InterPro domains Description Start Stop
IPR025610 MYC/MYB_N 39 182
No external refs found!