LOC_Os07g39090 (Os07g0578800, Os07g0578866)


Aliases : Os07g0578800, Os07g0578866

Description : 35.1.5 not assigned.no ontology.pentatricopeptide (PPR) repeat-containing protein Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0000001 (Gene family) Phylogenetic Tree(s): OG0000001_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os07g39090
Cluster HCCA cluster: Cluster_67

Target Alias Description ECC score Gene Family Method Actions
AT1G03540 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Gene family
AT1G17630 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Gene family
AT3G01580 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Gene family
AT3G03580 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
AT3G09040 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Gene family
AT3G49142 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
AT4G21065 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
AT4G21300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
AT5G19020 MEF18 mitochondrial editing factor 18 0.03 Gene family
Cpa|evm.model.tig00021435.54 No alias No description available 0.05 Gene family
GSVIVT01012159001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
GSVIVT01024588001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
LOC_Os03g13830 Os03g0241800 35.1.27 not assigned.no ontology.tetratricopeptide... 0.02 Gene family
LOC_Os04g41120 Os04g0488200 No description available 0.01 Gene family
LOC_Os07g20420 Os07g0299800 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
LOC_Os08g25280 Os08g0340900 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_14659g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_25515g0010 No alias No description available 0.01 Gene family
MA_25584g0010 No alias No description available 0.02 Gene family
MA_94165g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Smo105197 PACid_15412746 No description available 0.04 Gene family
Smo109721 PACid_15406466 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Smo79732 PACid_15404312 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Smo83034 PACid_15411135 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Solyc04g064750.2.1 Solyc04g064750.2 No description available 0.05 Gene family
Solyc09g007040.1.1 Solyc09g007040.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Solyc12g006575.1.1 Solyc12g006575.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Zm00001d013136 GRMZM5G892151 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Zm00001d025870 GRMZM5G827485 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Zm00001d028422 GRMZM2G019689 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Zm00001d029764 GRMZM2G383854 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d033495 GRMZM5G849971 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Zm00001d050938 GRMZM2G163396 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 671 692
IPR002885 Pentatricopeptide_repeat 696 744
IPR002885 Pentatricopeptide_repeat 596 642
IPR002885 Pentatricopeptide_repeat 495 538
IPR032867 DYW_dom 871 931
No external refs found!