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  5. MA_873737g0010

MA_873737g0010 (SDE1, RDR6, SGS2)


Aliases : SDE1, RDR6, SGS2

Description : Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp. japonica (sp|q8lhh9|shl2_orysj : 281.0)


Gene families : OG0001039 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001039_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_873737g0010

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene33143.t1 ATRDRP1, RDR1,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020816.45 No alias No description available 0.02 OrthoFinder output from all 47 species
Gb_08298 SDE1, RDR6, SGS2 RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003968 RNA-dependent RNA polymerase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR007855 RNA-dep_RNA_pol_euk-typ 1 85
No external refs found!