Aliases : SOC1, AGL20, ATSOC1
Description : transcription factor (MADS/AGL)
Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00013p00103080 | AGL9, SEP3,... | RNA biosynthesis.transcriptional activation.MADS box... | 0.04 | OrthoFinder output from all 47 species | |
AMTR_s00071p00193200 | STK, AGL11,... | RNA biosynthesis.transcriptional activation.MADS box... | 0.03 | OrthoFinder output from all 47 species | |
AMTR_s00109p00019490 | AGL16,... | No description available | 0.03 | OrthoFinder output from all 47 species | |
AT2G22630 | AGL17 | AGAMOUS-like 17 | 0.03 | OrthoFinder output from all 47 species | |
Aob_g02975 | SHP2, AGL5 | MADS/AGL-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aspi01Gene17819.t1 | SHP2, AGL5,... | MADS/AGL-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aspi01Gene17826.t1 | SHP2, AGL5,... | MADS/AGL-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aspi01Gene54037.t3 | Aspi01Gene54037 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Cba_g29409 | AGL6 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Dde_g07314 | AGL21 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Dde_g08748 | AGL9, SEP3 | MADS/AGL-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ehy_g07325 | AGL8, FUL | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
GSVIVT01006592001 | AGL61, DIA | RNA biosynthesis.transcriptional activation.MADS box... | 0.05 | OrthoFinder output from all 47 species | |
GSVIVT01008806001 | PI | RNA biosynthesis.transcriptional activation.MADS box... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01012110001 | AGL32, TT16, ABS | RNA biosynthesis.transcriptional activation.MADS box... | 0.02 | OrthoFinder output from all 47 species | |
GSVIVT01022182001 | AGL104 | RNA biosynthesis.transcriptional activation.MADS box... | 0.02 | OrthoFinder output from all 47 species | |
GSVIVT01025945001 | STK, AGL11 | RNA biosynthesis.transcriptional activation.MADS box... | 0.02 | OrthoFinder output from all 47 species | |
GSVIVT01026207001 | AGL32, TT16, ABS | RNA biosynthesis.transcriptional activation.MADS box... | 0.02 | OrthoFinder output from all 47 species | |
GSVIVT01027577001 | AGL6 | RNA biosynthesis.transcriptional activation.MADS box... | 0.05 | OrthoFinder output from all 47 species | |
GSVIVT01033253001 | AGL15 | RNA biosynthesis.transcriptional activation.MADS box... | 0.06 | OrthoFinder output from all 47 species | |
GSVIVT01035477001 | AGL30 | RNA biosynthesis.transcriptional activation.MADS box... | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os06g23950.1 | LOC_Os06g23950 | transcription factor (MADS/AGL) | 0.06 | OrthoFinder output from all 47 species | |
LOC_Os06g23980.1 | AGL16, LOC_Os06g23980 | MADS-box transcription factor 27 OS=Oryza sativa subsp.... | 0.03 | OrthoFinder output from all 47 species | |
MA_34737g0010 | AGL17 | no hits & (original description: none) | 0.04 | OrthoFinder output from all 47 species | |
Ppi_g28969 | AGL104 | MADS/AGL-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ppi_g62574 | SHP2, AGL5 | MADS/AGL-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0932.g027847 | SOC1, AGL20, ATSOC1 | MADS/AGL-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Sam_g13248 | No alias | MADS/AGL-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Sam_g13249 | No alias | MADS/AGL-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Solyc01g080785.1.1 | AGL61, DIA,... | transcription factor (MADS/AGL) | 0.04 | OrthoFinder output from all 47 species | |
Solyc01g106710.1.1 | AGL62, Solyc01g106710 | component MED19 of head module of MEDIATOR transcription... | 0.04 | OrthoFinder output from all 47 species | |
Solyc04g005320.3.1 | AGL2, SEP1,... | transcription factor (MADS/AGL) | 0.04 | OrthoFinder output from all 47 species | |
Solyc06g064840.4.1 | STK, AGL11,... | no description available(sp|f6i457|ag11c_vitvi : 172.0) | 0.04 | OrthoFinder output from all 47 species | |
Solyc10g017640.1.1 | GL19, AGL19,... | transcription factor (MADS/AGL) | 0.05 | OrthoFinder output from all 47 species | |
Solyc10g044965.1.1 | AGL21, Solyc10g044965 | transcription factor (MADS/AGL) | 0.04 | OrthoFinder output from all 47 species | |
Solyc10g080030.2.1 | AGL18, Solyc10g080030 | transcription factor (MADS/AGL) | 0.03 | OrthoFinder output from all 47 species | |
Solyc12g038510.2.1 | AGL4, SEP2,... | transcription factor (MADS/AGL) | 0.04 | OrthoFinder output from all 47 species | |
Solyc12g056460.3.1 | SOC1, AGL20,... | transcription factor (MADS/AGL) | 0.03 | OrthoFinder output from all 47 species | |
Spa_g47543 | AGL16 | MADS/AGL-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e005708_P002 | AGL2, SEP1,... | transcription factor (MADS/AGL) | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e023236_P005 | AGL6, Zm00001e023236 | transcription factor (MADS/AGL) | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e027034_P001 | PI, Zm00001e027034 | transcription factor (MADS/AGL) | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e030373_P001 | AGL10, CAL1,... | transcription factor (MADS/AGL) | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e039774_P001 | SHP2, AGL5,... | transcription factor (MADS/AGL) | 0.02 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEA | Interproscan |
MF | GO:0046983 | protein dimerization activity | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No Predicted GO terms available for this sequence |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002100 | TF_MADSbox | 10 | 56 |
No external refs found! |