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  5. LOC_Os01g52240.1

LOC_Os01g52240.1


Description : component LHCb1/2/3 of LHC-II complex


Gene families : OG_01_0000035 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000035_tree ,
OG_02_0000162 (LandPlants) Phylogenetic Tree(s): OG_02_0000162_tree ,
OG_03_0000359 (SeedPlants) Phylogenetic Tree(s): OG_03_0000359_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g52240.1
Cluster HCCA: Cluster_334

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00189p00032350 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
AT1G15820 CP24, LHCB6 light harvesting complex photosystem II subunit 6 0.03 Archaeplastida
AT1G29910 CAB3, AB180, LHCB1.2 chlorophyll A/B binding protein 3 0.03 Archaeplastida
AT1G29930 LHCB1.3, CAB140,... chlorophyll A/B binding protein 1 0.05 Archaeplastida
AT2G34420 LHCB1.5, LHB1B2 photosystem II light harvesting complex gene B1B2 0.06 Archaeplastida
AT3G08940 LHCB4.2 light harvesting complex photosystem II 0.04 Archaeplastida
AT3G47470 CAB4, LHCA4 light-harvesting chlorophyll-protein complex I subunit A4 0.04 Archaeplastida
Cre06.g278213 No alias Chlorophyll a-b binding protein P4, chloroplastic... 0.01 Archaeplastida
Cre10.g425900 No alias Chlorophyll a-b binding protein 4, chloroplastic... 0.01 Archaeplastida
Cre10.g452050 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.01 Archaeplastida
Gb_41161 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
LOC_Os01g41710.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
MA_10431300g0020 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
MA_131587g0010 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
MA_97315g0010 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
Mp7g05880.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
Mp7g06790.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
Mp7g09180.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
Mp7g09340.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
Pp3c10_25415V3.1 No alias photosystem I light harvesting complex gene 2 0.03 Archaeplastida
Pp3c10_25450V3.1 No alias photosystem I light harvesting complex gene 2 0.02 Archaeplastida
Pp3c12_25430V3.1 No alias light harvesting complex photosystem II 0.02 Archaeplastida
Pp3c12_25460V3.1 No alias light harvesting complex photosystem II 0.03 Archaeplastida
Pp3c13_14980V3.1 No alias photosystem I light harvesting complex gene 1 0.02 Archaeplastida
Pp3c18_8100V3.1 No alias photosystem II light harvesting complex gene 2.1 0.03 Archaeplastida
Pp3c19_20900V3.1 No alias light-harvesting chlorophyll B-binding protein 3 0.02 Archaeplastida
Pp3c1_34210V3.1 No alias light harvesting complex photosystem II subunit 6 0.02 Archaeplastida
Pp3c21_3950V3.1 No alias photosystem II light harvesting complex gene 2.1 0.02 Archaeplastida
Pp3c26_12230V3.1 No alias light harvesting complex of photosystem II 5 0.02 Archaeplastida
Pp3c26_6740V3.1 No alias photosystem II light harvesting complex gene 2.1 0.02 Archaeplastida
Pp3c4_17240V3.1 No alias photosystem II light harvesting complex gene 2.1 0.06 Archaeplastida
Pp3c4_5690V3.1 No alias light harvesting complex photosystem II 0.02 Archaeplastida
Pp3c6_6830V3.1 No alias photosystem II light harvesting complex gene 2.1 0.02 Archaeplastida
Solyc01g105030.3.1 No alias component LHCb6 of LHC-II complex 0.03 Archaeplastida
Solyc02g070940.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Solyc02g070950.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
Solyc02g070970.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
Solyc02g070980.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.05 Archaeplastida
Solyc02g070990.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.05 Archaeplastida
Solyc02g071000.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.05 Archaeplastida
Solyc02g071010.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Solyc02g071030.2.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
Solyc03g005760.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Solyc03g005770.3.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Solyc03g005780.3.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
Solyc06g069730.3.1 No alias component LHCa4 of LHC-I complex 0.03 Archaeplastida
Solyc07g047850.3.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Solyc07g063600.3.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Solyc08g067320.3.1 No alias Chlorophyll a-b binding protein 3A, chloroplastic... 0.05 Archaeplastida
Solyc08g067330.1.1 No alias Chlorophyll a-b binding protein 16, chloroplastic... 0.05 Archaeplastida
Solyc12g006140.2.1 No alias component LHCb1/2/3 of LHC-II complex 0.05 Archaeplastida
AMTR_s00006p00251360 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.02 LandPlants
AMTR_s00045p00069900 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.01 LandPlants
AMTR_s00189p00032350 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.02 LandPlants
AT1G29910 CAB3, AB180, LHCB1.2 chlorophyll A/B binding protein 3 0.02 LandPlants
AT1G29930 LHCB1.3, CAB140,... chlorophyll A/B binding protein 1 0.02 LandPlants
AT2G05070 LHCB2.2, LHCB2 photosystem II light harvesting complex gene 2.2 0.02 LandPlants
AT2G34420 LHCB1.5, LHB1B2 photosystem II light harvesting complex gene B1B2 0.02 LandPlants
AT5G54270 LHCB3*1, LHCB3 light-harvesting chlorophyll B-binding protein 3 0.02 LandPlants
Gb_41161 No alias component LHCb1/2/3 of LHC-II complex 0.03 LandPlants
LOC_Os01g41710.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 LandPlants
MA_10431300g0020 No alias component LHCb1/2/3 of LHC-II complex 0.02 LandPlants
MA_131587g0010 No alias component LHCb1/2/3 of LHC-II complex 0.03 LandPlants
MA_97315g0010 No alias component LHCb1/2/3 of LHC-II complex 0.02 LandPlants
Mp7g05880.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 LandPlants
Mp7g06770.1 No alias component LHCb1/2/3 of LHC-II complex 0.01 LandPlants
Mp7g06790.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 LandPlants
Mp7g09180.1 No alias component LHCb1/2/3 of LHC-II complex 0.01 LandPlants
Mp7g09340.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 LandPlants
Pp3c18_8100V3.1 No alias photosystem II light harvesting complex gene 2.1 0.02 LandPlants
Pp3c19_20900V3.1 No alias light-harvesting chlorophyll B-binding protein 3 0.02 LandPlants
Pp3c21_3950V3.1 No alias photosystem II light harvesting complex gene 2.1 0.02 LandPlants
Pp3c26_6740V3.1 No alias photosystem II light harvesting complex gene 2.1 0.02 LandPlants
Pp3c4_17240V3.1 No alias photosystem II light harvesting complex gene 2.1 0.06 LandPlants
Solyc02g070940.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 LandPlants
Solyc02g070950.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 LandPlants
Solyc02g070970.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 LandPlants
Solyc02g070980.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 LandPlants
Solyc02g070990.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 LandPlants
Solyc02g071000.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 LandPlants
Solyc02g071010.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 LandPlants
Solyc02g071030.2.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 LandPlants
Solyc03g005760.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 LandPlants
Solyc03g005770.3.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 LandPlants
Solyc03g005780.3.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 LandPlants
Solyc07g047850.3.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 LandPlants
Solyc07g063600.3.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 LandPlants
Solyc08g067320.3.1 No alias Chlorophyll a-b binding protein 3A, chloroplastic... 0.04 LandPlants
Solyc08g067330.1.1 No alias Chlorophyll a-b binding protein 16, chloroplastic... 0.04 LandPlants
Solyc12g006140.2.1 No alias component LHCb1/2/3 of LHC-II complex 0.05 LandPlants
Solyc12g011450.2.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 LandPlants
Zm00001e020627_P001 No alias component LHCb1/2/3 of LHC-II complex 0.02 LandPlants
Zm00001e035249_P001 No alias component LHCb1/2/3 of LHC-II complex 0.01 LandPlants
AMTR_s00006p00251360 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.02 SeedPlants
AMTR_s00045p00069900 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.01 SeedPlants
AMTR_s00189p00032350 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.02 SeedPlants
AT1G29910 CAB3, AB180, LHCB1.2 chlorophyll A/B binding protein 3 0.02 SeedPlants
AT1G29920 CAB2, AB165, LHCB1.1 chlorophyll A/B-binding protein 2 0.02 SeedPlants
AT1G29930 LHCB1.3, CAB140,... chlorophyll A/B binding protein 1 0.02 SeedPlants
AT2G05070 LHCB2.2, LHCB2 photosystem II light harvesting complex gene 2.2 0.02 SeedPlants
AT2G34420 LHCB1.5, LHB1B2 photosystem II light harvesting complex gene B1B2 0.02 SeedPlants
AT3G27690 LHCB2.3, LHCB2, LHCB2.4 photosystem II light harvesting complex gene 2.3 0.02 SeedPlants
MA_10431300g0020 No alias component LHCb1/2/3 of LHC-II complex 0.02 SeedPlants
MA_131587g0010 No alias component LHCb1/2/3 of LHC-II complex 0.01 SeedPlants
MA_97315g0010 No alias component LHCb1/2/3 of LHC-II complex 0.02 SeedPlants
Solyc02g070940.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 SeedPlants
Solyc02g070950.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 SeedPlants
Solyc02g070970.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 SeedPlants
Solyc02g070980.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 SeedPlants
Solyc02g070990.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 SeedPlants
Solyc02g071000.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 SeedPlants
Solyc02g071010.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 SeedPlants
Solyc02g071030.2.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 SeedPlants
Solyc03g005760.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 SeedPlants
Solyc03g005770.3.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 SeedPlants
Solyc03g005780.3.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 SeedPlants
Solyc07g047850.3.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 SeedPlants
Solyc08g067330.1.1 No alias Chlorophyll a-b binding protein 16, chloroplastic... 0.04 SeedPlants
Solyc12g006140.2.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 65 231
No external refs found!