MA_81219g0030 (emb1507)


Aliases : emb1507

Description : DExH-box ATP-dependent RNA helicase DExH12 OS=Arabidopsis thaliana (sp|q9syp1|dexhc_arath : 1053.0)


Gene families : OG0001175 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001175_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_81219g0030

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00114710 emb1507,... RNA processing.RNA splicing.spliceosome... 0.06 OrthoFinder output from all 47 species
AMTR_s00077p00041680 emb1507,... DExH-box ATP-dependent RNA helicase DExH12... 0.03 OrthoFinder output from all 47 species
AMTR_s00110p00146400 evm_27.TU.AmTr_v1... DExH-box ATP-dependent RNA helicase DExH14... 0.04 OrthoFinder output from all 47 species
AT1G20960 emb1507 U5 small nuclear ribonucleoprotein helicase, putative 0.02 OrthoFinder output from all 47 species
AT5G61140 No alias U5 small nuclear ribonucleoprotein helicase 0.06 OrthoFinder output from all 47 species
Adi_g117139 emb1507 RNA helicase *(Brr2) & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g29910 No alias RNA helicase *(Brr2) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g04355 emb1507 RNA helicase *(Brr2) & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g14557 No alias RNA helicase *(Brr2) & original description: none 0.06 OrthoFinder output from all 47 species
Als_g01991 emb1507 RNA helicase *(Brr2) & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g40053 emb1507 RNA helicase *(Brr2) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08117 emb1507 RNA helicase *(Brr2) & original description: none 0.09 OrthoFinder output from all 47 species
Aop_g09018 No alias RNA helicase *(Brr2) & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g05344 No alias RNA helicase *(Brr2) & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.1Z134800.1 Ceric.1Z134800 not classified & original description: pacid=50597112... 0.04 OrthoFinder output from all 47 species
Ceric.1Z263400.1 Ceric.1Z263400 RNA helicase *(Brr2) & original description:... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000865.27 emb1507 DExH-box ATP-dependent RNA helicase DExH12... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000865.28 emb1507 DExH-box ATP-dependent RNA helicase DExH12... 0.05 OrthoFinder output from all 47 species
Cre17.g744147 emb1507 RNA processing.RNA splicing.spliceosome... 0.02 OrthoFinder output from all 47 species
Dac_g02389 emb1507 RNA helicase *(Brr2) & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g12553 No alias RNA helicase *(Brr2) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g12406 No alias RNA helicase *(Brr2) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g19260 emb1507 RNA helicase *(Brr2) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g03005 No alias RNA helicase *(Brr2) & original description: none 0.07 OrthoFinder output from all 47 species
Ehy_g12876 emb1507 RNA helicase *(Brr2) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01007875001 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.11 OrthoFinder output from all 47 species
GSVIVT01010769001 emb1507 DExH-box ATP-dependent RNA helicase DExH12... 0.13 OrthoFinder output from all 47 species
Gb_18049 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.03 OrthoFinder output from all 47 species
Gb_27895 emb1507 RNA helicase (Brr2) 0.05 OrthoFinder output from all 47 species
LOC_Os02g01740.1 emb1507, LOC_Os02g01740 RNA helicase (Brr2) 0.08 OrthoFinder output from all 47 species
LOC_Os03g11470.1 LOC_Os03g11470 DExH-box ATP-dependent RNA helicase DExH14... 0.04 OrthoFinder output from all 47 species
Len_g21125 No alias RNA helicase *(Brr2) & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g05048 emb1507 RNA helicase *(Brr2) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g09106 No alias RNA helicase *(Brr2) & original description: none 0.03 OrthoFinder output from all 47 species
MA_10434882g0010 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.06 OrthoFinder output from all 47 species
MA_8113344g0010 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.06 OrthoFinder output from all 47 species
MA_930633g0010 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.08 OrthoFinder output from all 47 species
Mp1g06890.1 emb1507 RNA helicase (Brr2) 0.05 OrthoFinder output from all 47 species
Mp7g00250.1 No alias RNA helicase (Brr2) 0.02 OrthoFinder output from all 47 species
Nbi_g16836 No alias RNA helicase *(Brr2) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0017.g007145 No alias RNA helicase *(Brr2) & original description: CDS=159-5693 0.03 OrthoFinder output from all 47 species
Sam_g36113 No alias RNA helicase *(Brr2) & original description: none 0.03 OrthoFinder output from all 47 species
Smo144158 emb1507 RNA processing.RNA splicing.spliceosome... 0.03 OrthoFinder output from all 47 species
Smo178863 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.02 OrthoFinder output from all 47 species
Solyc06g082100.4.1 emb1507, Solyc06g082100 RNA helicase (Brr2) 0.05 OrthoFinder output from all 47 species
Tin_g07743 emb1507 RNA helicase *(Brr2) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e035676_P001 emb1507, Zm00001e035676 RNA helicase (Brr2) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR004179 Sec63-dom 6 42
IPR004179 Sec63-dom 411 728
No external refs found!