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MA_793801g0010


Description : Pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Arabidopsis thaliana (sp|q9squ6|pp216_arath : 262.0)


Gene families : OG0002119 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002119_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_793801g0010

Target Alias Description ECC score Gene Family Method Actions
AT5G48730 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
Aob_g03399 EMB2453, ATPPR5 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.1Z174800.1 Ceric.1Z174800 not classified & original description: pacid=50628243... 0.05 OrthoFinder output from all 47 species
GSVIVT01032162001 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.05 OrthoFinder output from all 47 species
Gb_00230 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.02 OrthoFinder output from all 47 species
LOC_Os03g02430.1 LOC_Os03g02430 Pentatricopeptide repeat-containing protein At3g53170... 0.04 OrthoFinder output from all 47 species
LOC_Os06g07550.1 LOC_Os06g07550 Pentatricopeptide repeat-containing protein At5g48730,... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0066.g016075 No alias not classified & original description: CDS=33-1412 0.03 OrthoFinder output from all 47 species
Solyc04g054270.4.1 EMB2453, ATPPR5,... Pentatricopeptide repeat-containing protein PPR5... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006353 DNA-templated transcription termination IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 8 54
IPR002885 Pentatricopeptide_repeat 116 162
IPR002885 Pentatricopeptide_repeat 184 227
IPR002885 Pentatricopeptide_repeat 83 110
No external refs found!