LOC_Os01g50160.1


Description : subfamily ABCB transporter


Gene families : OG_01_0000057 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000057_tree ,
OG_02_0000418 (LandPlants) Phylogenetic Tree(s): OG_02_0000418_tree ,
OG_03_0000295 (SeedPlants) Phylogenetic Tree(s): OG_03_0000295_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g50160.1
Cluster HCCA: Cluster_231

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00108620 evm_27.TU.AmTr_v1... Solute transport.primary active transport.ABC... 0.03 Archaeplastida
AMTR_s00045p00109940 evm_27.TU.AmTr_v1... Solute transport.primary active transport.ABC... 0.02 Archaeplastida
AT1G27940 PGP13 P-glycoprotein 13 0.04 Archaeplastida
AT1G28010 ABCB14, ATABCB14, PGP14 P-glycoprotein 14 0.03 Archaeplastida
AT2G47000 ATPGP4, PGP4, ABCB4, MDR4 ATP binding cassette subfamily B4 0.03 Archaeplastida
AT3G28345 No alias ABC transporter family protein 0.05 Archaeplastida
AT3G28360 PGP16 P-glycoprotein 16 0.02 Archaeplastida
AT3G62150 PGP21 P-glycoprotein 21 0.04 Archaeplastida
AT4G01820 PGP3, MDR3 P-glycoprotein 3 0.03 Archaeplastida
AT4G18050 PGP9 P-glycoprotein 9 0.03 Archaeplastida
AT4G25960 PGP2 P-glycoprotein 2 0.03 Archaeplastida
Cre17.g725150 No alias ABC transporter B family member 7 OS=Arabidopsis thaliana 0.01 Archaeplastida
GSVIVT01021365001 No alias Solute transport.primary active transport.ABC... 0.02 Archaeplastida
GSVIVT01028256001 No alias Solute transport.primary active transport.ABC... 0.07 Archaeplastida
Gb_02468 No alias subfamily ABCB transporter 0.06 Archaeplastida
Gb_02469 No alias subfamily ABCB transporter 0.03 Archaeplastida
Gb_07563 No alias subfamily ABCB transporter 0.07 Archaeplastida
Gb_10211 No alias subfamily ABCB transporter 0.02 Archaeplastida
Gb_32125 No alias subfamily ABCB transporter 0.07 Archaeplastida
Gb_33057 No alias subfamily ABCB transporter 0.04 Archaeplastida
Gb_33058 No alias subfamily ABCB transporter 0.04 Archaeplastida
Gb_36497 No alias subfamily ABCB transporter 0.03 Archaeplastida
MA_10436810g0020 No alias subfamily ABCB transporter 0.02 Archaeplastida
MA_107576g0010 No alias subfamily ABCB transporter 0.03 Archaeplastida
MA_111099g0010 No alias subfamily ABCB transporter 0.04 Archaeplastida
MA_138894g0010 No alias subfamily ABCB transporter 0.02 Archaeplastida
MA_1824g0020 No alias subfamily ABCB transporter 0.03 Archaeplastida
MA_635039g0010 No alias subfamily ABCB transporter 0.02 Archaeplastida
MA_636449g0010 No alias subfamily ABCB transporter 0.02 Archaeplastida
MA_6870g0010 No alias subfamily ABCB transporter 0.03 Archaeplastida
MA_83806g0010 No alias subfamily ABCB transporter 0.04 Archaeplastida
MA_934204g0010 No alias subfamily ABCB transporter 0.03 Archaeplastida
Mp2g11920.1 No alias subfamily ABCB transporter 0.02 Archaeplastida
Mp3g11830.1 No alias auxin efflux transporter (ABCB19). subfamily ABCB transporter 0.02 Archaeplastida
Mp7g04390.1 No alias subfamily ABCB transporter 0.02 Archaeplastida
Pp3c12_11230V3.1 No alias ATP binding cassette subfamily B4 0.03 Archaeplastida
Pp3c1_34680V3.1 No alias P-glycoprotein 10 0.02 Archaeplastida
Pp3c1_7215V3.1 No alias ATP binding cassette subfamily B19 0.02 Archaeplastida
Pp3c4_5170V3.1 No alias P-glycoprotein 11 0.04 Archaeplastida
Smo123915 No alias Solute transport.primary active transport.ABC... 0.02 Archaeplastida
Smo408755 No alias Solute transport.primary active transport.ABC... 0.03 Archaeplastida
Smo419451 No alias Solute transport.primary active transport.ABC... 0.02 Archaeplastida
Smo92485 No alias Solute transport.primary active transport.ABC... 0.02 Archaeplastida
Solyc03g005860.4.1 No alias subfamily ABCB transporter 0.04 Archaeplastida
Solyc03g093650.3.1 No alias subfamily ABCB transporter 0.04 Archaeplastida
Solyc06g009280.1.1 No alias subfamily ABCB transporter 0.04 Archaeplastida
Solyc06g009290.4.1 No alias subfamily ABCB transporter 0.04 Archaeplastida
Solyc08g076720.4.1 No alias subfamily ABCB transporter 0.03 Archaeplastida
Solyc11g067300.2.1 No alias subfamily ABCB transporter 0.05 Archaeplastida
Solyc11g067310.3.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Solyc12g098840.3.1 No alias subfamily ABCB transporter 0.05 Archaeplastida
Zm00001e014797_P002 No alias subfamily ABCB transporter 0.03 Archaeplastida
Zm00001e017444_P002 No alias subfamily ABCB transporter 0.03 Archaeplastida
Zm00001e023274_P001 No alias subfamily ABCB transporter 0.02 Archaeplastida
Zm00001e028117_P001 No alias subfamily ABCB transporter 0.03 Archaeplastida
Zm00001e041087_P002 No alias subfamily ABCB transporter 0.04 Archaeplastida
AT3G62150 PGP21 P-glycoprotein 21 0.02 LandPlants
AT4G01820 PGP3, MDR3 P-glycoprotein 3 0.03 LandPlants
GSVIVT01028256001 No alias Solute transport.primary active transport.ABC... 0.05 LandPlants
Gb_32125 No alias subfamily ABCB transporter 0.03 LandPlants
MA_138894g0010 No alias subfamily ABCB transporter 0.02 LandPlants
Mp7g04390.1 No alias subfamily ABCB transporter 0.02 LandPlants
Pp3c12_11230V3.1 No alias ATP binding cassette subfamily B4 0.03 LandPlants
Pp3c4_5170V3.1 No alias P-glycoprotein 11 0.04 LandPlants
Solyc03g005860.4.1 No alias subfamily ABCB transporter 0.03 LandPlants
Zm00001e017444_P002 No alias subfamily ABCB transporter 0.03 LandPlants
Zm00001e025438_P001 No alias subfamily ABCB transporter 0.02 LandPlants
Zm00001e028117_P001 No alias subfamily ABCB transporter 0.02 LandPlants
AT4G01820 PGP3, MDR3 P-glycoprotein 3 0.02 SeedPlants
GSVIVT01028256001 No alias Solute transport.primary active transport.ABC... 0.05 SeedPlants
Gb_32125 No alias subfamily ABCB transporter 0.01 SeedPlants
MA_138894g0010 No alias subfamily ABCB transporter 0.02 SeedPlants
Solyc03g005860.4.1 No alias subfamily ABCB transporter 0.02 SeedPlants
Zm00001e017444_P002 No alias subfamily ABCB transporter 0.03 SeedPlants
Zm00001e025438_P001 No alias subfamily ABCB transporter 0.02 SeedPlants
Zm00001e028117_P001 No alias subfamily ABCB transporter 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0016887 ATPase activity IEA Interproscan
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003439 ABC_transporter-like 1051 1199
IPR011527 ABC1_TM_dom 709 980
IPR011527 ABC1_TM_dom 55 327
IPR003439 ABC_transporter-like 395 543
No external refs found!