LOC_Os01g49680.1

Description : subunit SSL2/XPB of multifunctional TFIIh complex. component SSL2/XPB of TFIIh basal transcription factor complex

Gene families : OG_01_0004927 (Archaeplastida) Phylogenetic Tree(s): OG_01_0004927_tree ,
OG_02_0005344 (LandPlants) Phylogenetic Tree(s): OG_02_0005344_tree ,
OG_03_0006451 (SeedPlants) Phylogenetic Tree(s): OG_03_0006451_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os01g49680.1
Cluster	HCCA: Cluster_301

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00265330	evm_27.TU.AmTr_v1...	RNA biosynthesis.RNA polymerase II-dependent...	0.02	Archaeplastida
MA_10436494g0010	No alias	subunit SSL2/XPB of multifunctional TFIIh complex....	0.05	Archaeplastida
Pp3c6_13890V3.1	No alias	homolog of Xeroderma pigmentosum complementation group B 2	0.04	Archaeplastida
Smo147068	No alias	RNA biosynthesis.RNA polymerase II-dependent...	0.02	Archaeplastida
AMTR_s00001p00265330	evm_27.TU.AmTr_v1...	RNA biosynthesis.RNA polymerase II-dependent...	0.02	LandPlants
MA_10436494g0010	No alias	subunit SSL2/XPB of multifunctional TFIIh complex....	0.02	LandPlants
Pp3c6_13890V3.1	No alias	homolog of Xeroderma pigmentosum complementation group B 2	0.04	LandPlants
Smo147068	No alias	RNA biosynthesis.RNA polymerase II-dependent...	0.01	LandPlants
Smo230853	No alias	RNA biosynthesis.RNA polymerase II-dependent...	0.02	LandPlants
AMTR_s00001p00265330	evm_27.TU.AmTr_v1...	RNA biosynthesis.RNA polymerase II-dependent...	0.02	SeedPlants
Gb_19362	No alias	subunit SSL2/XPB of multifunctional TFIIh complex....	0.01	SeedPlants
MA_10436494g0010	No alias	subunit SSL2/XPB of multifunctional TFIIh complex....	0.02	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016787	hydrolase activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR032830	XPB/Ssl2_N	66	185
IPR006935	Helicase/UvrB_N	281	437
IPR032438	ERCC3_RAD25_C	463	709

External Links

No external refs found!