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  5. LOC_Os01g49280.1

LOC_Os01g49280.1


Description : RING-v-class E3 ligase


Gene families : OG_01_0000436 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000436_tree ,
OG_02_0014151 (LandPlants) Phylogenetic Tree(s): OG_02_0014151_tree ,
OG_03_0014064 (SeedPlants) Phylogenetic Tree(s): OG_03_0014064_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g49280.1
Cluster HCCA: Cluster_69

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00066p00203490 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AT1G14260 No alias RING/FYVE/PHD zinc finger superfamily protein 0.01 Archaeplastida
AT3G47550 No alias RING/FYVE/PHD zinc finger superfamily protein 0.02 Archaeplastida
Gb_37740 No alias RING-v-class E3 ligase 0.05 Archaeplastida
Smo420592 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
Solyc01g079530.4.1 No alias RING-v-class E3 ligase 0.02 Archaeplastida
Solyc02g091230.4.1 No alias RING-v-class E3 ligase 0.02 Archaeplastida
Solyc04g007600.4.1 No alias RING-v-class E3 ligase 0.04 Archaeplastida
Zm00001e017493_P001 No alias RING-v-class E3 ligase 0.03 Archaeplastida
Zm00001e028087_P001 No alias RING-v-class E3 ligase 0.02 Archaeplastida
Zm00001e028572_P001 No alias no hits & (original description: none) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR022143 DUF3675 159 274
No external refs found!