LOC_Os01g48370.1


Description : transcription factor (TUB)


Gene families : OG_01_0000335 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000335_tree ,
OG_02_0000295 (LandPlants) Phylogenetic Tree(s): OG_02_0000295_tree ,
OG_03_0005934 (SeedPlants) Phylogenetic Tree(s): OG_03_0005934_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g48370.1
Cluster HCCA: Cluster_347

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00153680 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.TUB... 0.03 Archaeplastida
AMTR_s00130p00115490 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.TUB... 0.03 Archaeplastida
AT3G06380 TLP9, ATTLP9 tubby-like protein 9 0.03 Archaeplastida
LOC_Os12g06630.2 No alias transcription factor (TUB) 0.04 Archaeplastida
Solyc09g074510.3.1 No alias transcription factor (TUB) 0.03 Archaeplastida
Solyc10g046970.2.1 No alias transcription factor (TUB) 0.02 Archaeplastida
Zm00001e023326_P001 No alias transcription factor (TUB) 0.03 Archaeplastida
Zm00001e028052_P001 No alias transcription factor (TUB) 0.02 Archaeplastida
Zm00001e039448_P004 No alias transcription factor (TUB) 0.03 Archaeplastida
AMTR_s00057p00153680 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.TUB... 0.03 LandPlants
AMTR_s00130p00115490 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.TUB... 0.03 LandPlants
MA_26482g0010 No alias no hits & (original description: none) 0.02 LandPlants
Pp3c23_17770V3.1 No alias tubby like protein 3 0.01 LandPlants
Solyc09g074510.3.1 No alias transcription factor (TUB) 0.03 LandPlants
Solyc10g046970.2.1 No alias transcription factor (TUB) 0.02 LandPlants
Zm00001e023326_P001 No alias transcription factor (TUB) 0.02 LandPlants
Zm00001e032131_P001 No alias transcription factor (TUB) 0.02 LandPlants
AMTR_s00130p00115490 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.TUB... 0.03 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000007 Tubby_C 98 351
No external refs found!