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MA_7292g0010 (ATCOL4, COL4)


Aliases : ATCOL4, COL4

Description : transcription factor (BBX-CO)


Gene families : OG0001141 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001141_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_7292g0010
Cluster HCCA: Cluster_118

Target Alias Description ECC score Gene Family Method Actions
AT2G24790 COL3, ATCOL3 CONSTANS-like 3 0.03 OrthoFinder output from all 47 species
Als_g13330 ATCOL4, COL4 floral promoter *(CONSTANS) & original description: none 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001024.14 No alias No description available 0.02 OrthoFinder output from all 47 species
LOC_Os02g08150.1 ATCOL5, COL5,... Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os04g42020.1 ATCOL5, COL5,... transcription factor (BBX-CO) 0.04 OrthoFinder output from all 47 species
LOC_Os10g41100.1 ATCOL5, COL5,... Transcription factor GHD7 OS=Oryza sativa subsp.... 0.03 OrthoFinder output from all 47 species
Ore_g34586 ATCOL5, COL5 floral promoter *(CONSTANS) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g19172 COL1, ATCOL1 floral promoter *(CONSTANS) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e041152_P001 ATCOL5, COL5,... transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
InterPro domains Description Start Stop
IPR000315 Znf_B-box 68 113
IPR000315 Znf_B-box 26 67
IPR010402 CCT_domain 271 313
No external refs found!