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  5. MA_7256709g0010

MA_7256709g0010


Description : Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana (sp|q0wvk7|ppr12_arath : 307.0)


Gene families : OG0000596 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000596_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_7256709g0010
Cluster HCCA: Cluster_700

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00170900 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g64320,... 0.03 OrthoFinder output from all 47 species
AMTR_s00061p00171020 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g63130,... 0.01 OrthoFinder output from all 47 species
AMTR_s00061p00171060 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g64320,... 0.01 OrthoFinder output from all 47 species
AT1G63630 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 OrthoFinder output from all 47 species
Adi_g003355 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g015683 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g108491 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g128550 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g18260 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g18261 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g18948 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g43877 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g48359 No alias not classified & original description: none 0.11 OrthoFinder output from all 47 species
Ala_g14316 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g16750 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g21631 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g25412 No alias not classified & original description: none 0.11 OrthoFinder output from all 47 species
Ala_g38128 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Ala_g38378 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g38904 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g29453 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g49979 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g49980 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g49981 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g18449 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g18028 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene05693.t1 Aspi01Gene05693 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene05694.t1 Aspi01Gene05694 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g25488 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g37191 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g43548 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g19215 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g38980 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g38980 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01036253001 No alias Pentatricopeptide repeat-containing protein At1g12620... 0.25 OrthoFinder output from all 47 species
Len_g07355 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g07378 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g14840 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g20281 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g24294 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g27355 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g31072 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g36891 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Len_g39133 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g39172 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g46947 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g46948 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g50202 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Len_g54744 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g56845 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g25858 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g27390 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g29463 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_33956g0010 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.08 OrthoFinder output from all 47 species
Msp_g04828 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g11830 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g25561 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ore_g30153 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g37824 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g39836 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0059.g015168 No alias not classified & original description: CDS=1-606 0.01 OrthoFinder output from all 47 species
Smo100394 No alias Pentatricopeptide repeat-containing protein At1g09900... 0.02 OrthoFinder output from all 47 species
Smo103638 No alias Pentatricopeptide repeat-containing protein At3g22470,... 0.01 OrthoFinder output from all 47 species
Smo107819 No alias Pentatricopeptide repeat-containing protein At1g09900... 0.01 OrthoFinder output from all 47 species
Smo121294 No alias Pentatricopeptide repeat-containing protein At1g09900... 0.04 OrthoFinder output from all 47 species
Smo121322 No alias Pentatricopeptide repeat-containing protein At1g06710,... 0.06 OrthoFinder output from all 47 species
Smo123660 GRP23 Pentatricopeptide repeat-containing protein At3g06920... 0.02 OrthoFinder output from all 47 species
Smo165305 No alias Putative pentatricopeptide repeat-containing protein... 0.01 OrthoFinder output from all 47 species
Smo404389 No alias Pentatricopeptide repeat-containing protein At1g06710,... 0.03 OrthoFinder output from all 47 species
Smo52385 No alias Pentatricopeptide repeat-containing protein At1g62910... 0.02 OrthoFinder output from all 47 species
Smo74408 No alias Pentatricopeptide repeat-containing protein At1g12775,... 0.04 OrthoFinder output from all 47 species
Smo94312 No alias Pentatricopeptide repeat-containing protein At1g09900... 0.02 OrthoFinder output from all 47 species
Smo99426 No alias Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica 0.02 OrthoFinder output from all 47 species
Tin_g19161 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 126 156
IPR002885 Pentatricopeptide_repeat 53 102
IPR002885 Pentatricopeptide_repeat 301 347
IPR002885 Pentatricopeptide_repeat 161 207
IPR002885 Pentatricopeptide_repeat 368 417
IPR002885 Pentatricopeptide_repeat 229 277
IPR002885 Pentatricopeptide_repeat 14 46
No external refs found!