LOC_Os07g25450 (Os07g0435900)

Aliases : Os07g0435900

Description : 27.3.69 RNA.regulation of transcription.SET-domain transcriptional regulator family Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. Gene is expressed in rosettes, stems, floral buds, and flowers by RT-PCR. SU(VAR)3-9 homolog 2 (SUVH2)

Gene families : OG_01_0000166 (Gene family) Phylogenetic Tree(s): OG0000166_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os07g25450

Target Alias Description ECC score Gene Family Method Actions
AT5G13960 SDG33, SUVH4, KYP SU(VAR)3-9 homolog 4 0.03 Gene family
AT5G47150 No alias YDG/SRA domain-containing protein 0.02 Gene family
GSVIVT01001083001 No alias 27.3.69 RNA.regulation of transcription.SET-domain... 0.01 Gene family
GSVIVT01005913001 No alias No description available 0.02 Gene family
Solyc08g077940.2.1 Solyc08g077940.2 No description available 0.03 Gene family
Zm00001d019195 No alias 27.3.69 RNA.regulation of transcription.SET-domain... 0.02 Gene family
Zm00001d032343 GRMZM2G074094 No description available 0.04 Gene family

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA InterProScan
MF GO:0008270 zinc ion binding IEA InterProScan
MF GO:0018024 histone-lysine N-methyltransferase activity IEA InterProScan
BP GO:0034968 histone lysine methylation IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001214 SET_dom 541 673
IPR003105 SRA_YDG 239 392
IPR007728 Pre-SET_dom 423 522
No external refs found!