LOC_Os07g22220 (Os07g0405100)


Aliases : Os07g0405100

Description : 27.3.55 RNA.regulation of transcription.HDA Encodes a WD-40 protein involved in histone deacetylation in response to abiotic stress.Identified in a screen for mutations with altered expression of stress induced genes. Functions as a repressor of cold tolerance induced genes. Loss of function mutants are hypersensitive to freezing. high expression of osmotically responsive genes 15 (HOS15)


Gene families : OG_01_0001588 (Gene family) Phylogenetic Tree(s): OG0001588_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os07g22220
Cluster HCCA cluster: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
AT5G67320 HOS15 WD-40 repeat family protein 0.02 Gene family
Cre12.g527500 No alias 27.3.55 RNA.regulation of transcription.HDA Encodes a... 0.02 Gene family
GSVIVT01000179001 No alias 27.3.55 RNA.regulation of transcription.HDA Encodes a... 0.06 Gene family
Solyc04g078320.3.1 Solyc04g078320.3 20.2.2 stress.abiotic.cold Encodes a WD-40 protein... 0.02 Gene family
Zm00001d004383 GRMZM2G149708 27.3.55 RNA.regulation of transcription.HDA Encodes a... 0.06 Gene family
Zm00001d025048 GRMZM2G159330 27.3.55 RNA.regulation of transcription.HDA Encodes a... 0.04 Gene family

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR006594 LisH 8 33
IPR001680 WD40_repeat 473 511
IPR001680 WD40_repeat 255 294
IPR001680 WD40_repeat 201 234
IPR001680 WD40_repeat 381 418
IPR001680 WD40_repeat 301 335
IPR001680 WD40_repeat 423 468
No external refs found!