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MA_6394g0010 (APUM12, PUM12)


Aliases : APUM12, PUM12

Description : Pumilio homolog 12 OS=Arabidopsis thaliana (sp|q9lvc3|pum12_arath : 197.0)


Gene families : OG0000858 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000858_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_6394g0010

Target Alias Description ECC score Gene Family Method Actions
Aev_g13809 APUM12, PUM12 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g50820 APUM12, PUM12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g02900 APUM12, PUM12 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g13050 APUM12, PUM12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01009386001 APUM12, PUM12 Pumilio homolog 12 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
MA_171998g0010 APUM12, PUM12 Pumilio homolog 12 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e039541_P001 APUM12, PUM12,... Pumilio homolog 12 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006396 RNA processing IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
CC GO:0035658 Mon1-Ccz1 complex IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 689 723
IPR001313 Pumilio_RNA-bd_rpt 731 759
IPR001313 Pumilio_RNA-bd_rpt 657 687
IPR001313 Pumilio_RNA-bd_rpt 767 794
IPR000571 Znf_CCCH 500 521
No external refs found!