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MA_5769g0010


Description : Putative pentatricopeptide repeat-containing protein At2g01510 OS=Arabidopsis thaliana (sp|q9s7f4|pp206_arath : 653.0)


Gene families : OG0027133 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0027133_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_5769g0010
Cluster HCCA: Cluster_172

Target Alias Description ECC score Gene Family Method Actions
Gb_15394 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0006783 heme biosynthetic process IEP HCCA
BP GO:0006784 heme A biosynthetic process IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0042168 heme metabolic process IEP HCCA
BP GO:0042440 pigment metabolic process IEP HCCA
BP GO:0046148 pigment biosynthetic process IEP HCCA
BP GO:0046160 heme a metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 276 304
IPR002885 Pentatricopeptide_repeat 147 175
IPR002885 Pentatricopeptide_repeat 542 590
IPR002885 Pentatricopeptide_repeat 310 357
IPR002885 Pentatricopeptide_repeat 178 225
IPR002885 Pentatricopeptide_repeat 410 458
IPR002885 Pentatricopeptide_repeat 644 691
IPR002885 Pentatricopeptide_repeat 618 642
IPR002885 Pentatricopeptide_repeat 486 512
IPR002885 Pentatricopeptide_repeat 784 813
IPR002885 Pentatricopeptide_repeat 719 742
IPR032867 DYW_dom 818 941
No external refs found!