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  5. MA_57493g0010

MA_57493g0010 (SOC1, AGL20, ATSOC1)


Aliases : SOC1, AGL20, ATSOC1

Description : transcription factor (MADS/AGL)


Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_57493g0010
Cluster HCCA: Cluster_231

Target Alias Description ECC score Gene Family Method Actions
AT4G22950 GL19, AGL19 AGAMOUS-like 19 0.03 OrthoFinder output from all 47 species
Adi_g061705 AGL14 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g20111 AGL16 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g04967 AGL21 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.12G052200.1 GL19, AGL19,... MADS/AGL-type transcription factor & original... 0.05 OrthoFinder output from all 47 species
Dde_g17972 GL19, AGL19 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Len_g38722 AGL1, SHP1 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_10256834g0010 SOC1, AGL20, ATSOC1 transcription factor (MADS/AGL) 0.06 OrthoFinder output from all 47 species
MA_10289256g0010 SOC1, AGL20, ATSOC1 transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
MA_1170g0010 AGL8, FUL no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
MA_133455g0010 AGL6 transcription factor (MADS/AGL) 0.06 OrthoFinder output from all 47 species
MA_276701g0010 SOC1, AGL20, ATSOC1 transcription factor (MADS/AGL) 0.07 OrthoFinder output from all 47 species
MA_458668g0010 SOC1, AGL20, ATSOC1 transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
MA_607627g0010 SOC1, AGL20, ATSOC1 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Pir_g46269 GL19, AGL19 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g48804 AGL8, FUL regulatory protein *(AP1/CAL/FUL) of floral meristem... 0.03 OrthoFinder output from all 47 species
Pp3c16_12230V3.1 Pp3c16_12230 No annotation 0.01 OrthoFinder output from all 47 species
Spa_g23073 AGL6 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 10 57
No external refs found!