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  5. MA_56506g0010

MA_56506g0010 (VAP27, VAP27-1, (AT)VAP, VAP)


Aliases : VAP27, VAP27-1, (AT)VAP, VAP

Description : contact site protein (VAP27) of ER-cytoskeleton-plasmamembrane interface


Gene families : OG0000655 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000655_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_56506g0010

Target Alias Description ECC score Gene Family Method Actions
Dcu_g35384 VAP27, VAP27-1,... contact site protein (VAP27) of... 0.06 OrthoFinder output from all 47 species
Ehy_g28468 PVA12 contact site protein (VAP27) of... 0.02 OrthoFinder output from all 47 species
GSVIVT01017816001 PVA12 Vesicle-associated protein 1-2 OS=Arabidopsis thaliana 0.08 OrthoFinder output from all 47 species
LOC_Os04g45190.3 PVA12, LOC_Os04g45190 contact site protein (VAP27) of... 0.05 OrthoFinder output from all 47 species
LOC_Os04g46780.1 LOC_Os04g46780 contact site protein (VAP27) of... 0.03 OrthoFinder output from all 47 species
LOC_Os10g40140.1 LOC_Os10g40140 contact site protein (VAP27) of... 0.03 OrthoFinder output from all 47 species
Solyc08g007390.2.1 PVA12, Solyc08g007390 contact site protein (VAP27) of... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0010215 cellulose microfibril organization IEP HCCA
MF GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEP HCCA
MF GO:0015020 glucuronosyltransferase activity IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0030198 extracellular matrix organization IEP HCCA
CC GO:0031225 obsolete anchored component of membrane IEP HCCA
BP GO:0043062 extracellular structure organization IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
InterPro domains Description Start Stop
IPR000535 MSP_dom 6 109
No external refs found!