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  5. MA_54149g0010

MA_54149g0010 (PRAF1)


Aliases : PRAF1

Description : PH, RCC1 and FYVE domains-containing protein 1 OS=Arabidopsis thaliana (sp|q947d2|praf1_arath : 782.0)


Gene families : OG0000592 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000592_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_54149g0010

Target Alias Description ECC score Gene Family Method Actions
AT1G76950 PRAF1 Regulator of chromosome condensation (RCC1) family with... 0.03 OrthoFinder output from all 47 species
AT5G19420 No alias Regulator of chromosome condensation (RCC1) family with... 0.04 OrthoFinder output from all 47 species
Adi_g117138 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g20707 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g09949 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene71481.t1 Aspi01Gene71481 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0027.g023605 No alias not classified & original description: CDS=735-3878 0.03 OrthoFinder output from all 47 species
Azfi_s0167.g054488 No alias not classified & original description: CDS=1991-5185 0.06 OrthoFinder output from all 47 species
Ceric.35G058700.1 Ceric.35G058700 not classified & original description: pacid=50582057... 0.04 OrthoFinder output from all 47 species
Cre16.g691050 PRAF1 PH, RCC1 and FYVE domains-containing protein 1... 0.02 OrthoFinder output from all 47 species
Ehy_g20970 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g25466 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ehy_g30318 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01001675001 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.03 OrthoFinder output from all 47 species
Gb_13554 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.04 OrthoFinder output from all 47 species
Len_g14356 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g28405 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Mp1g24610.1 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.04 OrthoFinder output from all 47 species
Nbi_g06824 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g13544 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo112120 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.02 OrthoFinder output from all 47 species
Solyc11g065120.3.1 Solyc11g065120 PH, RCC1 and FYVE domains-containing protein 1... 0.05 OrthoFinder output from all 47 species
Zm00001e007139_P001 Zm00001e007139 PH, RCC1 and FYVE domains-containing protein 1... 0.02 OrthoFinder output from all 47 species
Zm00001e028276_P001 Zm00001e028276 PH, RCC1 and FYVE domains-containing protein 1... 0.04 OrthoFinder output from all 47 species
Zm00001e028312_P001 Zm00001e028312 PH, RCC1 and FYVE domains-containing protein 1... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000306 Znf_FYVE 423 489
IPR000408 Reg_chr_condens 204 252
IPR000408 Reg_chr_condens 97 145
IPR000408 Reg_chr_condens 318 367
IPR000408 Reg_chr_condens 372 419
IPR000408 Reg_chr_condens 149 199
IPR000408 Reg_chr_condens 266 313
No external refs found!