LOC_Os07g12200 (Os07g0223400)


Aliases : Os07g0223400

Description : 29.4 protein.postranslational modification Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. Members of this family are known to be essential for vesicle coating and uncoating and functions in GTP-binding. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct. ARF1A1C


Gene families : OG_01_0000487 (Gene family) Phylogenetic Tree(s): OG0000487_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os07g12200
Cluster HCCA cluster: Cluster_298

Target Alias Description ECC score Gene Family Method Actions
AT1G10630 ATARFA1F, ARFA1F ADP-ribosylation factor A1F 0.07 Gene family
AT1G70490 ARFA1D, ATARFA1D Ras-related small GTP-binding family protein 0.03 Gene family
AT2G24765 ATARL1, ARF3, ARL1 ADP-ribosylation factor 3 0.05 Gene family
AT2G47170 ARF1A1C Ras-related small GTP-binding family protein 0.05 Gene family
AT5G14670 ATARFA1B, ARFA1B ADP-ribosylation factor A1B 0.02 Gene family
Cpa|evm.model.tig00021127.129 No alias 29.3.4.99 protein.targeting.secretory... 0.03 Gene family
Cre12.g535900 No alias 29.4 protein.postranslational modification GTPase... 0.05 Gene family
GSVIVT01013765001 No alias 29.3.4.99 protein.targeting.secretory... 0.05 Gene family
GSVIVT01017654001 No alias 29.4 protein.postranslational modification A member of... 0.06 Gene family
GSVIVT01028179001 No alias 29.3.4.99 protein.targeting.secretory... 0.07 Gene family
MA_167779g0010 No alias 29.4 protein.postranslational modification GTPase... 0.03 Gene family
MA_4349g0020 No alias 29.3.4.99 protein.targeting.secretory... 0.02 Gene family
Smo75668 PACid_15414445 No description available 0.03 Gene family
Solyc01g008000.3.1 Solyc01g008000.3 No description available 0.04 Gene family
Solyc05g005190.3.1 Solyc05g005190.3 29.3.4.99 protein.targeting.secretory... 0.02 Gene family
Solyc07g006640.3.1 Solyc07g006640.3 29.4 protein.postranslational modification GTPase... 0.05 Gene family
Zm00001d005231 No alias 29.4 protein.postranslational modification Gene encoding... 0.05 Gene family
Zm00001d008295 GRMZM2G015361 29.3.4.99 protein.targeting.secretory... 0.03 Gene family
Zm00001d019191 GRMZM2G105996 29.4 protein.postranslational modification Gene encoding... 0.04 Gene family
Zm00001d049348 GRMZM2G147726 29.4 protein.postranslational modification GTPase... 0.05 Gene family

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR006689 Small_GTPase_ARF/SAR 57 194
IPR006689 Small_GTPase_ARF/SAR 7 50
No external refs found!