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MA_50249g0010


Description : DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa subsp. japonica (sp|q10mh8|rh24_orysj : 654.0)


Gene families : OG0005452 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005452_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_50249g0010

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00182070 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Ala_g02493 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g04428 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g02915 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.20G028100.1 Ceric.20G028100 not classified & original description: pacid=50566612... 0.05 OrthoFinder output from all 47 species
Cre12.g522850 No alias DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
Dac_g07921 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g49902 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
GSVIVT01028137001 No alias DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
LOC_Os03g19530.1 LOC_Os03g19530 DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa... 0.08 OrthoFinder output from all 47 species
Len_g35470 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g04177 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Mp4g12240.1 No alias DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Ore_g18559 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g19215 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0047.g013422 No alias not classified & original description: CDS=101-1306 0.03 OrthoFinder output from all 47 species
Sam_g19373 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo51367 No alias DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Solyc01g079330.3.1 Solyc01g079330 DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e001454_P001 Zm00001e001454 DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Zm00001e038325_P002 Zm00001e038325 DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003689 DNA clamp loader activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005663 DNA replication factor C complex IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 493 601
IPR011545 DEAD/DEAH_box_helicase_dom 295 466
IPR011545 DEAD/DEAH_box_helicase_dom 217 287
No external refs found!