1. Home
  2. Species
  3. Picea abies
  4. Sequence
  5. MA_492314g0010

MA_492314g0010


Description : RNA editing factor (POCO)


Gene families : OG0000613 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000613_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_492314g0010

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00095p00019470 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g80270,... 0.05 OrthoFinder output from all 47 species
AMTR_s00095p00027730 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g80270,... 0.03 OrthoFinder output from all 47 species
AMTR_s00135p00094680 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g27460... 0.02 OrthoFinder output from all 47 species
AT1G02370 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 OrthoFinder output from all 47 species
AT1G15480 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G60770 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.08 OrthoFinder output from all 47 species
AT1G80270 PPR596 PENTATRICOPEPTIDE REPEAT 596 0.04 OrthoFinder output from all 47 species
AT3G15590 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G01990 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 OrthoFinder output from all 47 species
AT4G02820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.08 OrthoFinder output from all 47 species
AT5G09450 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Aev_g30824 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g38854 No alias RNA editing factor *(POCO) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g07362 No alias RNA editing factor *(POCO) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g02151 No alias RNA editing factor *(POCO) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0251.g060292 No alias RNA editing factor *(POCO) & original description: CDS=143-2071 0.03 OrthoFinder output from all 47 species
Cba_g11231 No alias RNA editing factor *(POCO) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.17G065300.1 Ceric.17G065300 RNA editing factor *(POCO) & original description:... 0.06 OrthoFinder output from all 47 species
Dac_g21533 No alias RNA editing factor *(POCO) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g01745 PPR596 RNA editing factor *(POCO) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g08858 No alias RNA editing factor *(POCO) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g14866 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01002065001 No alias Pentatricopeptide repeat-containing protein At4g21705,... 0.04 OrthoFinder output from all 47 species
GSVIVT01006654001 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.03 OrthoFinder output from all 47 species
GSVIVT01020533001 No alias Pentatricopeptide repeat-containing protein At2g20710,... 0.05 OrthoFinder output from all 47 species
GSVIVT01020534001 No alias Pentatricopeptide repeat-containing protein At2g20710,... 0.03 OrthoFinder output from all 47 species
GSVIVT01024495001 No alias Pentatricopeptide repeat-containing protein At4g02820,... 0.05 OrthoFinder output from all 47 species
GSVIVT01031246001 No alias Pentatricopeptide repeat-containing protein At4g01990,... 0.09 OrthoFinder output from all 47 species
GSVIVT01033642001 No alias Pentatricopeptide repeat-containing protein At1g80270,... 0.05 OrthoFinder output from all 47 species
Gb_03508 No alias Pentatricopeptide repeat-containing protein At4g02820,... 0.04 OrthoFinder output from all 47 species
Gb_20238 No alias RNA editing factor (POCO) 0.06 OrthoFinder output from all 47 species
Gb_27873 No alias RNA editing factor (POCO) 0.06 OrthoFinder output from all 47 species
LOC_Os01g17320.1 PPR596, LOC_Os01g17320 RNA editing factor (POCO) 0.03 OrthoFinder output from all 47 species
LOC_Os02g55310.1 LOC_Os02g55310 Pentatricopeptide repeat-containing protein At5g27460... 0.02 OrthoFinder output from all 47 species
LOC_Os04g25410.1 LOC_Os04g25410 Pentatricopeptide repeat-containing protein At1g60770... 0.04 OrthoFinder output from all 47 species
LOC_Os04g37720.1 LOC_Os04g37720 Pentatricopeptide repeat-containing protein At5g09450,... 0.02 OrthoFinder output from all 47 species
LOC_Os07g12140.1 LOC_Os07g12140 RNA editing factor (POCO) 0.02 OrthoFinder output from all 47 species
LOC_Os07g40750.1 LOC_Os07g40750 Pentatricopeptide repeat-containing protein At4g21705,... 0.03 OrthoFinder output from all 47 species
LOC_Os10g35750.1 LOC_Os10g35750 Pentatricopeptide repeat-containing protein At2g20710,... 0.03 OrthoFinder output from all 47 species
LOC_Os12g07260.1 PPR596, LOC_Os12g07260 RNA editing factor (POCO) 0.07 OrthoFinder output from all 47 species
LOC_Os12g34340.1 LOC_Os12g34340 Pentatricopeptide repeat-containing protein At4g02820,... 0.04 OrthoFinder output from all 47 species
Len_g15360 PPR596 RNA editing factor *(POCO) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g19004 No alias RNA editing factor *(POCO) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g25974 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g55669 No alias RNA editing factor *(POCO) & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g10791 PPR596 RNA editing factor *(POCO) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g39062 No alias RNA editing factor *(POCO) & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g25474 No alias RNA editing factor *(POCO) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g29727 No alias RNA editing factor *(POCO) & original description: none 0.02 OrthoFinder output from all 47 species
Smo420704 No alias Pentatricopeptide repeat-containing protein At1g80270,... 0.03 OrthoFinder output from all 47 species
Solyc01g079320.4.1 Solyc01g079320 Pentatricopeptide repeat-containing protein At1g02370,... 0.03 OrthoFinder output from all 47 species
Solyc07g063220.4.1 Solyc07g063220 Pentatricopeptide repeat-containing protein At4g21705,... 0.04 OrthoFinder output from all 47 species
Solyc11g006380.2.1 Solyc11g006380 Pentatricopeptide repeat-containing protein At1g60770... 0.07 OrthoFinder output from all 47 species
Solyc12g020050.2.1 PPR596, Solyc12g020050 RNA editing factor (POCO) 0.04 OrthoFinder output from all 47 species
Spa_g11271 No alias RNA editing factor *(POCO) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g37476 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e012594_P001 Zm00001e012594 Pentatricopeptide repeat-containing protein At4g21705,... 0.03 OrthoFinder output from all 47 species
Zm00001e026211_P002 Zm00001e026211 Pentatricopeptide repeat-containing protein At1g02370,... 0.1 OrthoFinder output from all 47 species
Zm00001e036620_P001 Zm00001e036620 Pentatricopeptide repeat-containing protein At1g60770... 0.08 OrthoFinder output from all 47 species
Zm00001e039746_P002 Zm00001e039746 Pentatricopeptide repeat-containing protein At4g02820,... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
InterPro domains Description Start Stop
IPR033443 PPR_long 132 283
No external refs found!