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MA_468267g0010 (PUB9, ATPUB9)


Aliases : PUB9, ATPUB9

Description : U-box domain-containing protein 13 OS=Arabidopsis thaliana (sp|q9snc6|pub13_arath : 192.0)


Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_468267g0010

Target Alias Description ECC score Gene Family Method Actions
AT1G10560 PUB18, ATPUB18 plant U-box 18 0.03 OrthoFinder output from all 47 species
Adi_g019046 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g026489 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g28208 ATPUB17, PUB17 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene43158.t1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene44182.t1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene59239.t1 PUB14, ATPUB14,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0481.g073128 No alias not classified & original description: CDS=1-237 0.04 OrthoFinder output from all 47 species
Cba_g02580 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g35890 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g18007 ATPUB17, PUB17 not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01023893001 PUB15 U-box domain-containing protein 15 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_13754 PUB13, ATPUB13 E3 ubiquitin ligase (PUB) 0.05 OrthoFinder output from all 47 species
Gb_24091 PUB9, ATPUB9 U-box domain-containing protein 14 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Gb_29129 ATPUB17, PUB17 U-box domain-containing protein 1 OS=Medicago truncatula... 0.03 OrthoFinder output from all 47 species
LOC_Os01g72600.1 LOC_Os01g72600 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Pir_g12544 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g07479 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g26460 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g11362 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Solyc04g082440.4.1 PUB15, Solyc04g082440 U-box domain-containing protein 15 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Spa_g04508 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g11467 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g11468 PUB14, ATPUB14 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g14575 PUB18, ATPUB18 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e010671_P001 Zm00001e010671 U-box domain-containing protein 4 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009733 response to auxin IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
CC GO:0046658 obsolete anchored component of plasma membrane IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
InterPro domains Description Start Stop
IPR000225 Armadillo 66 102
IPR000225 Armadillo 105 144
IPR000225 Armadillo 164 201
No external refs found!