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  5. MA_45121g0020

MA_45121g0020


Description : Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana (sp|q0wvk7|ppr12_arath : 246.0)


Gene families : OG0000596 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000596_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_45121g0020
Cluster HCCA: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
Dcu_g34345 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
MA_10428849g0010 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.03 OrthoFinder output from all 47 species
MA_10429462g0020 No alias Pentatricopeptide repeat-containing protein At3g22470,... 0.01 OrthoFinder output from all 47 species
MA_6283623g0010 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Smo123660 GRP23 Pentatricopeptide repeat-containing protein At3g06920... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006487 protein N-linked glycosylation IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
MF GO:0008375 acetylglucosaminyltransferase activity IEP HCCA
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 213 262
IPR002885 Pentatricopeptide_repeat 73 122
IPR002885 Pentatricopeptide_repeat 143 192
IPR002885 Pentatricopeptide_repeat 5 51
IPR002885 Pentatricopeptide_repeat 279 304
No external refs found!