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  5. MA_423098g0010

MA_423098g0010 (WTF1, AtWTF1)


Aliases : WTF1, AtWTF1

Description : WTF1 plastidial RNA basal splicing factor


Gene families : OG0001240 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001240_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_423098g0010

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00241290 WTF1, AtWTF1,... RNA processing.organelle machineries.RNA... 0.04 OrthoFinder output from all 47 species
AT4G01037 WTF1, AtWTF1 Ubiquitin carboxyl-terminal hydrolase family protein 0.06 OrthoFinder output from all 47 species
Aop_g37366 WTF1, AtWTF1 plastidial RNA basal splicing factor *(WTF1) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene21348.t1 WTF1, AtWTF1,... plastidial RNA basal splicing factor *(WTF1) & original... 0.02 OrthoFinder output from all 47 species
Cba_g17771 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.24G041500.1 WTF1, AtWTF1,... plastidial RNA basal splicing factor *(WTF1) & original... 0.05 OrthoFinder output from all 47 species
Ceric.25G074200.1 WTF1, AtWTF1,... not classified & original description: pacid=50593386... 0.05 OrthoFinder output from all 47 species
Dcu_g01485 WTF1, AtWTF1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g44157 WTF1, AtWTF1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g28294 WTF1, AtWTF1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01027077001 WTF1, AtWTF1 RNA processing.organelle machineries.RNA... 0.06 OrthoFinder output from all 47 species
Gb_07993 WTF1, AtWTF1 WTF1 plastidial RNA basal splicing factor 0.06 OrthoFinder output from all 47 species
Gb_34809 WTF1, AtWTF1 WTF1 plastidial RNA basal splicing factor 0.04 OrthoFinder output from all 47 species
LOC_Os05g49610.1 WTF1, AtWTF1,... WTF1 plastidial RNA basal splicing factor 0.08 OrthoFinder output from all 47 species
Len_g11779 WTF1, AtWTF1 plastidial RNA basal splicing factor *(WTF1) & original... 0.04 OrthoFinder output from all 47 species
Lfl_g05402 WTF1, AtWTF1 plastidial RNA basal splicing factor *(WTF1) & original... 0.03 OrthoFinder output from all 47 species
MA_158434g0010 WTF1, AtWTF1 WTF1 plastidial RNA basal splicing factor 0.04 OrthoFinder output from all 47 species
Mp3g04080.1 WTF1, AtWTF1 WTF1 plastidial RNA basal splicing factor 0.02 OrthoFinder output from all 47 species
Nbi_g04260 WTF1, AtWTF1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g06540 WTF1, AtWTF1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g09523 WTF1, AtWTF1 plastidial RNA basal splicing factor *(WTF1) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004928 WTF1, AtWTF1 plastidial RNA basal splicing factor *(WTF1) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0075.g017364 WTF1, AtWTF1 not classified & original description: CDS=1-1380 0.02 OrthoFinder output from all 47 species
Zm00001e026570_P001 WTF1, AtWTF1,... WTF1 plastidial RNA basal splicing factor 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR021099 PORR_domain 93 422
No external refs found!