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  5. MA_42218g0010

MA_42218g0010 (PUM1, APUM1)


Aliases : PUM1, APUM1

Description : Pumilio homolog 1 OS=Arabidopsis thaliana (sp|q9zw07|pum1_arath : 676.0)


Gene families : OG0000583 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000583_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_42218g0010

Target Alias Description ECC score Gene Family Method Actions
AT2G29190 APUM2, PUM2 pumilio 2 0.05 OrthoFinder output from all 47 species
Adi_g010436 APUM2, PUM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g011592 APUM2, PUM2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g011593 PUM1, APUM1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g075414 APUM2, PUM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g079535 APUM2, PUM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g081646 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g61874 APUM4, PUM4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g12103 PUM1, APUM1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.18G068300.1 APUM2, PUM2,... not classified & original description: pacid=50621207... 0.03 OrthoFinder output from all 47 species
Dcu_g48916 APUM2, PUM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01016507001 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01024919001 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01029553001 PUM5, APUM5 Pumilio homolog 5 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Gb_23280 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Gb_30039 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Gb_31285 APUM2, PUM2 Pumilio homolog 2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os08g40830.1 LOC_Os08g40830 Pumilio homolog 5 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Lfl_g08945 APUM2, PUM2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10434828g0010 APUM2, PUM2 Pumilio homolog 2 OS=Arabidopsis thaliana... 0.09 OrthoFinder output from all 47 species
Mp7g16700.1 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Pir_g01375 PUM1, APUM1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g06503 APUM2, PUM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g15647 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo1983 APUM4, PUM4 Pumilio homolog 1 OS=Arabidopsis thaliana 0.08 OrthoFinder output from all 47 species
Smo86145 APUM4, PUM4 Pumilio homolog 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Solyc03g123980.4.1 PUM5, APUM5,... Pumilio homolog 5 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Solyc06g076340.3.1 APUM2, PUM2,... Pumilio homolog 1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Tin_g15133 APUM2, PUM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e027653_P001 PUM1, APUM1,... Pumilio homolog 2 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e029661_P001 APUM2, PUM2,... Pumilio homolog 2 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 154 178
IPR001313 Pumilio_RNA-bd_rpt 326 353
IPR001313 Pumilio_RNA-bd_rpt 290 323
IPR001313 Pumilio_RNA-bd_rpt 363 395
IPR001313 Pumilio_RNA-bd_rpt 182 214
IPR001313 Pumilio_RNA-bd_rpt 412 438
IPR001313 Pumilio_RNA-bd_rpt 256 287
IPR001313 Pumilio_RNA-bd_rpt 218 248
IPR012940 NABP 2 144
No external refs found!