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  5. LOC_Os01g27040.1

LOC_Os01g27040.1


Description : chromatin remodeling factor (Iswi)


Gene families : OG_01_0000082 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000082_tree ,
OG_02_0003200 (LandPlants) Phylogenetic Tree(s): OG_02_0003200_tree ,
OG_03_0004460 (SeedPlants) Phylogenetic Tree(s): OG_03_0004460_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g27040.1
Cluster HCCA: Cluster_262

Target Alias Description ECC score Gene Family Method Actions
AT2G25170 PKL, GYM, CHR6,... chromatin remodeling factor CHD3 (PICKLE) 0.03 Archaeplastida
Cpa|evm.model.tig00000545.10 No alias Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis thaliana 0.01 Archaeplastida
GSVIVT01018979001 No alias ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01035901001 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
Gb_16888 No alias ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Gb_39649 No alias chromatin remodeling factor (Iswi) 0.02 Archaeplastida
MA_42406g0010 No alias chromatin remodeling factor (DDM1) 0.02 Archaeplastida
MA_8926002g0010 No alias Chromatin structure-remodeling complex protein SYD... 0.02 Archaeplastida
Pp3c17_19520V3.1 No alias chromatin remodeling 1 0.03 Archaeplastida
Smo102849 No alias Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
Smo440203 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
Solyc01g067390.4.1 No alias chromatin remodeling factor (Iswi) 0.02 Archaeplastida
Solyc02g062780.4.1 No alias chromatin remodeling factor (DDM1) 0.05 Archaeplastida
Solyc06g054560.3.1 No alias chromatin remodeling factor (Iswi) 0.05 Archaeplastida
Zm00001e011541_P001 No alias chromatin remodeling factor (DDM1) 0.06 Archaeplastida
Zm00001e017643_P001 No alias chromatin remodeling factor (Iswi) 0.06 Archaeplastida
Zm00001e026331_P001 No alias chromatin remodeling factor (Iswi) 0.08 Archaeplastida
Gb_39649 No alias chromatin remodeling factor (Iswi) 0.02 LandPlants
MA_102992g0010 No alias Probable chromatin-remodeling complex ATPase chain... 0.02 LandPlants
Solyc06g054560.3.1 No alias chromatin remodeling factor (Iswi) 0.03 LandPlants
Zm00001e017643_P001 No alias chromatin remodeling factor (Iswi) 0.05 LandPlants
Zm00001e026331_P001 No alias chromatin remodeling factor (Iswi) 0.08 LandPlants
Gb_39649 No alias chromatin remodeling factor (Iswi) 0.02 SeedPlants
Solyc01g067390.4.1 No alias chromatin remodeling factor (Iswi) 0.01 SeedPlants
Solyc06g054560.3.1 No alias chromatin remodeling factor (Iswi) 0.03 SeedPlants
Zm00001e017643_P001 No alias chromatin remodeling factor (Iswi) 0.04 SeedPlants
Zm00001e026331_P001 No alias chromatin remodeling factor (Iswi) 0.08 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006338 chromatin remodeling IEA Interproscan
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA Interproscan
MF GO:0031491 nucleosome binding IEA Interproscan
BP GO:0043044 ATP-dependent chromatin remodeling IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR015195 SLIDE 935 1045
IPR000330 SNF2_dom 244 511
IPR015194 ISWI_HAND-dom 795 856
IPR001650 Helicase_C 534 646
No external refs found!