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MA_40046g0020 (At-SR34, SRP34,...)


Aliases : At-SR34, SRP34, ATSRP34, SR34, SR1

Description : SR30/34 RNA splicing factor


Gene families : OG0001059 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001059_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_40046g0020

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000857.20 At-SR34, SRP34,... RNA processing.RNA splicing.spliceosome-associated... 0.01 OrthoFinder output from all 47 species
Pir_g45943 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g19709 No alias RNA splicing factor *(SR30/34) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc06g009060.4.1 At-SR34, SRP34,... SR30/34 RNA splicing factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0018995 host cellular component IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 111 173
IPR000504 RRM_dom 8 75
No external refs found!