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Aliases : UPF1, ATUPF1, LBA1
Description : Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana (sp|q9fjr0|rent1_arath : 360.0)
Gene families : OG0001598 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001598_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT5G47010 | UPF1, ATUPF1, LBA1 | RNA helicase, putative | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g29734 | UPF1, ATUPF1, LBA1 | Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g16050 | UPF1, ATUPF1, LBA1 | Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g31771 | UPF1, ATUPF1, LBA1 | Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.37G063700.1 | UPF1, ATUPF1,... | Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g11492 | UPF1, ATUPF1, LBA1 | Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g20574 | UPF1, ATUPF1, LBA1 | Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os07g31340.1 | UPF1, ATUPF1,... | UPF1 Nonsense-Mediated mRNA Decay effector protein | 0.03 | OrthoFinder output from all 47 species | |
| Mp1g01200.1 | UPF1, ATUPF1, LBA1 | UPF1 Nonsense-Mediated mRNA Decay effector protein | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g11844 | UPF1, ATUPF1, LBA1 | Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g25380 | No alias | Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g29675 | No alias | Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc08g007110.4.1 | UPF1, ATUPF1,... | UPF1 Nonsense-Mediated mRNA Decay effector protein | 0.05 | OrthoFinder output from all 47 species | |
| Solyc08g077420.3.1 | UPF1, ATUPF1,... | UPF1 Nonsense-Mediated mRNA Decay effector protein | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g07774 | UPF1, ATUPF1, LBA1 | Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e010427_P002 | UPF1, ATUPF1,... | UPF1 Nonsense-Mediated mRNA Decay effector protein | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008641 | ubiquitin-like modifier activating enzyme activity | IEP | HCCA |
| MF | GO:0016874 | ligase activity | IEP | HCCA |
| MF | GO:0016877 | ligase activity, forming carbon-sulfur bonds | IEP | HCCA |
| MF | GO:0140657 | ATP-dependent activity | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR041679 | DNA2/NAM7-like_C | 5 | 109 |
| No external refs found! |